Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001975.1

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Forward (+)

23385 .. 26322

Gene Structure 2938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001975.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgatcttcggcctcggctctggctccaccgtcaaacacgtcgtggatcgcttgggcgagcttttacaacagggaaaagttcacagcatcatcggaatttctgagaacacccaccaacaagtcatctctcttagaattacattatccaacctcgatgactacccgatcctcgatctcgctattgacggtgccgacgaggtggacccccacctcaacctagtcaaaggccgctgcaggtacctcttgagagagaaaatggtggagggcgcgttagaaattcgtgctaggttcaagaacatgaacgaatcaaggattgctgaaattttccttgataatttggatgatggcctgaaggggaatgttttggaattgaaggaagagttggactctgaatttgttagtgtcctcaagtccttggggttggatgtggagataagatcaaaagaattcattgagcaaactttgccctcagaagtcaaggccaagattgaagtcaaggccagatttttttctgctggcatggacaagttgtgcccatctatacatacagtgtacgacgatggaatgataccgtttttaactgacgccttacaagaagttgatgcccgtgtcccctaccgtagcgttatttccccttccgcaactgatgatcaaattgaaagagagatttacaagttcatgagtatgcagactagagtcttcattgtccatataacaacggatcaatgctctaagctattggtcaaggcagaagagattggaatgatggatgaaggctatgcttggttaatcactaatgggattgctaatcgcttaacttcgatgaattcttcagtcatcaattccatgaatggagtaataggtgtgcaaacttatgtccaagaaacaagagatcttgaagaagtcaagctccggtggaaaaggcagttccaaaaagaacatccactcgtctttggcgctgaattggatgtttctggactttgggcttatgatgctgcttttgcacttgcaatggcaattgaacgggacttgacacttttcttacctctccatatggtccaaaactttgcgaagccttgtaaactactagatttgaaggcatcgccggcaatctcagctttgttgatgggcaacttcaatcatcaaattttggcattgtcaatgttgatggtcgtggagcacgatcaattggattttggacaccgcaacatggactggctagcaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

409

Amino Acids

46.16

Weight (kDa)

5.13

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	225
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	188, 237
AccII	CGCG	1 cut(s)	269
AciI	CCGC	3 cut(s)	229, 639, 1204
AclWI	GGATC	3 cut(s)	54, 160, 729
AcsI	RAATTY	7 cut(s)	96, 276, 321, 392, 446, 826, 1146
AcuI	CTGAAG	2 cut(s)	371, 816
AcyI	GRCGYC	1 cut(s)	585
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	2 cut(s)	239, 554
AfiI	CCNNNNNNNGG	1 cut(s)	1210
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	8 cut(s)	292, 373, 491, 659, 899, 1022, 1096, 1138
AjiI	CACGTC	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	4 cut(s)	61, 736, 910, 1118
AluI	AGCT	4 cut(s)	61, 736, 910, 1118
Alw21I	GWGCWC	1 cut(s)	1182
AlwI	GGATC	3 cut(s)	54, 160, 729
AoxI	GGCC	5 cut(s)	10, 226, 346, 480, 498
ApeKI	GCWGC	2 cut(s)	231, 995
ApoI	RAATTY	7 cut(s)	96, 276, 321, 392, 446, 826, 1146
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
Asp718I	GGTACC	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	269, 959
AspS9I	GGNCC	2 cut(s)	202, 1057
AsuNHI	GCTAGC	1 cut(s)	1219
AvaII	GGWCC	2 cut(s)	202, 1057
BaeGI	GKGCMC	1 cut(s)	536
BanI	GGYRCC	2 cut(s)	188, 237
BbsI	GAAGAC	1 cut(s)	691
Bbv12I	GWGCWC	1 cut(s)	1182
BbvI	GCAGC	2 cut(s)	218, 982
BccI	CCATC	6 cut(s)	338, 544, 554, 760, 1120, 1162
BclI	TGATCA	1 cut(s)	649
BfaI	CTAG	5 cut(s)	218, 285, 693, 1088, 1220
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	960
BfuAI	ACCTGC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	892
BisI	GCNGC	3 cut(s)	229, 232, 996
BlsI	GCNGC	3 cut(s)	230, 233, 997
Bme18I	GGWCC	2 cut(s)	202, 1057
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	202, 1057
BmiI	GGNNCC	4 cut(s)	25, 190, 204, 239
BmsI	GCATC	4 cut(s)	96, 592, 982, 1109
BmtI	GCTAGC	1 cut(s)	1223
BoxI	GACNNNNGTC	1 cut(s)	695
BpiI	GAAGAC	1 cut(s)	691
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpuEI	CTTGAG	2 cut(s)	265, 392
BsaHI	GRCGYC	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	13, 414
BsaWI	WCCGGW	1 cut(s)	912
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	1210
Bse118I	RCCGGY	1 cut(s)	1105
Bse1I	ACTGG	1 cut(s)	1220
Bse3DI	GCAATG	1 cut(s)	1017
BseDI	CCNNGG	2 cut(s)	13, 414
BseGI	GGATG	5 cut(s)	346, 430, 775, 940, 973
BseLI	CCNNNNNNNGG	1 cut(s)	1210
BseMI	GCAATG	1 cut(s)	1017
BseMII	CTCAG	3 cut(s)	93, 483, 1128
BseNI	ACTGG	1 cut(s)	1220
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	2 cut(s)	218, 982
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	5 cut(s)	12, 228, 348, 482, 500
BshNI	GGYRCC	2 cut(s)	188, 237
BsiHKAI	GWGCWC	1 cut(s)	1182
BsiSI	CCGG	2 cut(s)	913, 1106
BslFI	GGGAC	2 cut(s)	596, 1040
BslI	CCNNNNNNNGG	1 cut(s)	1210
BsmFI	GGGAC	2 cut(s)	596, 1040
BsnI	GGCC	5 cut(s)	12, 228, 348, 482, 500
Bsp1286I	GDGCHC	2 cut(s)	536, 1182
Bsp143I	GATC	9 cut(s)	3, 46, 165, 172, 437, 649, 721, 892, 1183
BspACI	CCGC	3 cut(s)	229, 639, 1204
BspANI	GGCC	5 cut(s)	12, 228, 348, 482, 500
BspCNI	CTCAG	3 cut(s)	94, 482, 1127
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	678
BspLI	GGNNCC	4 cut(s)	25, 190, 204, 239
BspMAI	CTGCAG	1 cut(s)	236
BspMI	ACCTGC	1 cut(s)	225
BspOI	GCTAGC	1 cut(s)	1223
BspPI	GGATC	3 cut(s)	54, 160, 729
BspT107I	GGYRCC	2 cut(s)	188, 237
BsrDI	GCAATG	1 cut(s)	1017
BsrFI	RCCGGY	1 cut(s)	1105
BsrI	ACTGG	1 cut(s)	1220
BssAI	RCCGGY	1 cut(s)	1105
BssECI	CCNNGG	2 cut(s)	13, 414
BssMI	GATC	9 cut(s)	3, 46, 165, 172, 437, 649, 721, 892, 1183
BssNI	GRCGYC	1 cut(s)	585
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	5 cut(s)	31, 188, 550, 573, 620
Bst6I	CTCTTC	2 cut(s)	372, 747
BstACI	GRCGYC	1 cut(s)	585
BstAPI	GCANNNNNTGC	1 cut(s)	463
BstC8I	GCNNGC	4 cut(s)	59, 517, 1107, 1221
BstDEI	CTNAG	5 cut(s)	102, 131, 469, 732, 1114
BstF5I	GGATG	5 cut(s)	346, 430, 775, 940, 973
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	960
BstHHI	GCGC	2 cut(s)	269, 959
BstKTI	GATC	9 cut(s)	6, 49, 168, 175, 440, 652, 724, 895, 1186
BstMBI	GATC	9 cut(s)	3, 46, 165, 172, 437, 649, 721, 892, 1183
BstMWI	GCNNNNNNNGC	5 cut(s)	463, 992, 1001, 1106, 1115
BstPAI	GACNNNNGTC	1 cut(s)	695
BstSFI	CTRYAG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	536
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	218, 982
BstV2I	GAAGAC	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	892
BsuRI	GGCC	5 cut(s)	12, 228, 348, 482, 500
BtgZI	GCGATG	1 cut(s)	1086
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	5 cut(s)	346, 430, 775, 940, 973
BtsIMutI	CAGTG	1 cut(s)	555
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	4 cut(s)	59, 517, 1107, 1221
CciI	TCATGA	1 cut(s)	678
CfoI	GCGC	2 cut(s)	269, 959
Cfr10I	RCCGGY	1 cut(s)	1105
Cfr13I	GGNCC	2 cut(s)	202, 1057
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	2 cut(s)	238, 553
CviAII	CATG	5 cut(s)	298, 520, 679, 847, 1210
CviQI	GTAC	2 cut(s)	238, 553
DdeI	CTNAG	5 cut(s)	102, 131, 469, 732, 1114
DpnI	GATC	9 cut(s)	5, 48, 167, 174, 439, 651, 723, 894, 1185
DpnII	GATC	9 cut(s)	3, 46, 165, 172, 437, 649, 721, 892, 1183
DraIII	CACNNNGTG	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	372, 747
EarI	CTCTTC	2 cut(s)	372, 747
Eco130I	CCWWGG	1 cut(s)	414
Eco47I	GGWCC	2 cut(s)	202, 1057
Eco57I	CTGAAG	2 cut(s)	371, 816
EcoRI	GAATTC	2 cut(s)	446, 826
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	5 cut(s)	301, 523, 682, 850, 1213
FaqI	GGGAC	2 cut(s)	596, 1040
FatI	CATG	5 cut(s)	297, 519, 678, 846, 1209
FauNDI	CATATG	1 cut(s)	1053
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	3 cut(s)	229, 232, 996
FokI	GGATG	5 cut(s)	353, 437, 782, 927, 980
Fsp4HI	GCNGC	3 cut(s)	229, 232, 996
FspBI	CTAG	5 cut(s)	218, 285, 693, 1088, 1220
GlaI	GCGC	2 cut(s)	268, 958
GluI	GCNGC	3 cut(s)	229, 232, 996
HaeII	RGCGCY	1 cut(s)	960
HaeIII	GGCC	5 cut(s)	12, 228, 348, 482, 500
HapII	CCGG	2 cut(s)	913, 1106
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	2 cut(s)	269, 959
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	5 cut(s)	301, 523, 682, 850, 1213
Hin6I	GCGC	2 cut(s)	267, 957
HinP1I	GCGC	2 cut(s)	267, 957
HinfI	GANTC	3 cut(s)	305, 386, 696
HpaII	CCGG	2 cut(s)	913, 1106
Hpy166II	GTNNAC	4 cut(s)	82, 202, 553, 1082
Hpy188I	TCNGA	4 cut(s)	95, 103, 391, 472
Hpy188III	TCNNGA	5 cut(s)	244, 292, 679, 896, 975
Hpy8I	GTNNAC	4 cut(s)	82, 202, 553, 1082
Hpy99I	CGWCG	3 cut(s)	44, 197, 560
HpyAV	CCTTC	5 cut(s)	346, 367, 645, 767, 1090
HpyCH4III	ACNGT	5 cut(s)	31, 188, 550, 573, 620
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	5 cut(s)	234, 688, 868, 1004, 1010
HpyF10VI	GCNNNNNNNGC	5 cut(s)	463, 992, 1001, 1106, 1115
HpyF3I	CTNAG	5 cut(s)	102, 131, 469, 732, 1114
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	5 cut(s)	301, 523, 682, 850, 1213
HspAI	GCGC	2 cut(s)	267, 957
KpnI	GGTACC	1 cut(s)	241
KroI	GCCGGC	1 cut(s)	1105
KroNI	GCCGGC	1 cut(s)	1107
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	9 cut(s)	3, 46, 165, 172, 437, 649, 721, 892, 1183
LmnI	GCTCC	3 cut(s)	29, 915, 1177
Lsp1109I	GCAGC	2 cut(s)	218, 982
LweI	GCATC	4 cut(s)	96, 592, 982, 1109
MaeI	CTAG	5 cut(s)	218, 285, 693, 1088, 1220
MaeII	ACGT	1 cut(s)	39
MalI	GATC	9 cut(s)	5, 48, 167, 174, 439, 651, 723, 894, 1185
MboI	GATC	9 cut(s)	3, 46, 165, 172, 437, 649, 721, 892, 1183
MboII	GAAGA	5 cut(s)	389, 691, 764, 822, 911
MfeI	CAATTG	2 cut(s)	1017, 1187
MflI	RGATCY	1 cut(s)	892
MhlI	GDGCHC	2 cut(s)	536, 1182
MlyI	GAGTC	2 cut(s)	380, 705
MmeI	TCCRAC	3 cut(s)	171, 363, 402
MroNI	GCCGGC	1 cut(s)	1105
MseI	TTAA	3 cut(s)	578, 788, 815
MslI	CAYNNNNRTG	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	2 cut(s)	913, 1106
MunI	CAATTG	2 cut(s)	1017, 1187
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	5 cut(s)	463, 992, 1001, 1106, 1115
NaeI	GCCGGC	1 cut(s)	1107
NdeI	CATATG	1 cut(s)	1053
NdeII	GATC	9 cut(s)	3, 46, 165, 172, 437, 649, 721, 892, 1183
NgoMIV	GCCGGC	1 cut(s)	1105
NheI	GCTAGC	1 cut(s)	1219
NlaIII	CATG	5 cut(s)	301, 523, 682, 850, 1213
NlaIV	GGNNCC	4 cut(s)	25, 190, 204, 239
PagI	TCATGA	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 1179
PdiI	GCCGGC	1 cut(s)	1107
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	230, 233, 997
PleI	GAGTC	2 cut(s)	380, 704
PpsI	GAGTC	2 cut(s)	380, 704
PshAI	GACNNNNGTC	1 cut(s)	695
PspN4I	GGNNCC	4 cut(s)	25, 190, 204, 239
PspPI	GGNCC	2 cut(s)	202, 1057
PstI	CTGCAG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	892
RsaI	GTAC	2 cut(s)	239, 554
RsaNI	GTAC	2 cut(s)	238, 553
RseI	CAYNNNNRTG	1 cut(s)	683
SaqAI	TTAA	3 cut(s)	578, 788, 815
SatI	GCNGC	3 cut(s)	229, 232, 996
Sau3AI	GATC	9 cut(s)	3, 46, 165, 172, 437, 649, 721, 892, 1183
Sau96I	GGNCC	2 cut(s)	202, 1057
SchI	GAGTC	2 cut(s)	380, 705
SduI	GDGCHC	2 cut(s)	536, 1182
SfaNI	GCATC	4 cut(s)	96, 592, 982, 1109
SfcI	CTRYAG	1 cut(s)	232
SinI	GGWCC	2 cut(s)	202, 1057
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	2 cut(s)	244, 407
SmoI	CTYRAG	2 cut(s)	244, 407
SsiI	CCGC	3 cut(s)	229, 639, 1204
SspMI	CTAG	5 cut(s)	218, 285, 693, 1088, 1220
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	5 cut(s)	31, 188, 550, 573, 620
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	153, 171, 821
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	3 cut(s)	578, 788, 815
Tru9I	TTAA	3 cut(s)	578, 788, 815
TscAI	CASTG	1 cut(s)	555
TseI	GCWGC	2 cut(s)	231, 995
TspDTI	ATGAA	7 cut(s)	314, 439, 667, 691, 786, 839, 863
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	202, 1057
XapI	RAATTY	7 cut(s)	96, 276, 321, 392, 446, 826, 1146
XspI	CTAG	5 cut(s)	218, 285, 693, 1088, 1220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.