Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002964.1

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Reverse (-)

9528 .. 9926

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002964.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgacccaagacgagttgaagaaaatggccgcctacaaggtcgtcgagtccggcatgatcttcggtcttaactctggctccaccatcaaacacaccgtggatcgcttgggcgagcttttacaaccgggaaaagttcacaacatcatcggaatttccgagaacacccaccaacaagtcatctctcttagaatttcattatccaacctcgatgactacccgatcctcgatctcgctatcgacggtgccgacgaggtagatccccacctcaacctagtcaaagtccgctgcgggttagaaattcgtgctgggttcaagaacatgaacgaatcaaggattgctgacattttcttcttttgctttttagccgggttcaagaacataaatattatgaatttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

132

Amino Acids

14.75

Weight (kDa)

5.74

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AciI	CCGC	3 cut(s)	30, 283, 288
AclWI	GGATC	3 cut(s)	108, 214, 251
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	4 cut(s)	150, 189, 297, 391
AdeI	CACNNNGTG	1 cut(s)	97
AgsI	TTSAA	3 cut(s)	19, 313, 373
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AlwI	GGATC	3 cut(s)	108, 214, 251
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	4 cut(s)	150, 189, 297, 391
AsuC2I	CCSGG	2 cut(s)	126, 367
BanI	GGYRCC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcnI	CCSGG	2 cut(s)	126, 367
BfaI	CTAG	2 cut(s)	272, 397
BisI	GCNGC	2 cut(s)	30, 286
BlsI	GCNGC	2 cut(s)	31, 287
Bme1390I	CCNGG	2 cut(s)	126, 367
BmiI	GGNNCC	2 cut(s)	79, 244
BmrFI	CCNGG	2 cut(s)	126, 367
BpuMI	CCSGG	2 cut(s)	126, 367
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
BseDI	CCNNGG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	51, 125, 366
BsnI	GGCC	1 cut(s)	29
Bsp143I	GATC	5 cut(s)	57, 100, 219, 226, 256
BspACI	CCGC	3 cut(s)	30, 283, 288
BspANI	GGCC	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	79, 244
BspPI	GGATC	3 cut(s)	108, 214, 251
BspT107I	GGYRCC	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	5 cut(s)	57, 100, 219, 226, 256
Bst4CI	ACNGT	2 cut(s)	97, 242
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	96
BstKTI	GATC	5 cut(s)	60, 103, 222, 229, 259
BstMBI	GATC	5 cut(s)	57, 100, 219, 226, 256
BstSCI	CCNGG	2 cut(s)	124, 365
BstV1I	GCAGC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	113
CviAII	CATG	2 cut(s)	55, 319
CviJI	RGCY	4 cut(s)	29, 78, 115, 365
CviKI_1	RGCY	4 cut(s)	29, 78, 115, 365
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	5 cut(s)	59, 102, 221, 228, 258
DpnII	GATC	5 cut(s)	57, 100, 219, 226, 256
DraIII	CACNNNGTG	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	27
FaeI	CATG	2 cut(s)	58, 322
FaiI	YATR	4 cut(s)	56, 320, 380, 389
FatI	CATG	2 cut(s)	54, 318
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	2 cut(s)	30, 286
Fsp4HI	GCNGC	2 cut(s)	30, 286
FspBI	CTAG	2 cut(s)	272, 397
GluI	GCNGC	2 cut(s)	30, 286
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	3 cut(s)	51, 125, 366
Hin1II	CATG	2 cut(s)	58, 322
HinfI	GANTC	2 cut(s)	47, 326
HpaII	CCGG	3 cut(s)	51, 125, 366
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	149, 157
Hpy188III	TCNNGA	2 cut(s)	313, 373
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	3 cut(s)	47, 242, 251
HpyCH4III	ACNGT	2 cut(s)	97, 242
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	58, 322
Kzo9I	GATC	5 cut(s)	57, 100, 219, 226, 256
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	5 cut(s)	60, 64, 138, 291, 379
Lsp1109I	GCAGC	1 cut(s)	272
MaeI	CTAG	2 cut(s)	272, 397
MalI	GATC	5 cut(s)	59, 102, 221, 228, 258
MboI	GATC	5 cut(s)	57, 100, 219, 226, 256
MboII	GAAGA	3 cut(s)	31, 52, 340
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	4 cut(s)	150, 189, 297, 391
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	215, 233, 244, 275
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	3 cut(s)	51, 125, 366
MspR9I	CCNGG	2 cut(s)	126, 367
NciI	CCSGG	2 cut(s)	126, 367
NdeII	GATC	5 cut(s)	57, 100, 219, 226, 256
NlaIII	CATG	2 cut(s)	58, 322
NlaIV	GGNNCC	2 cut(s)	79, 244
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 243, 246
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	31, 287
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	79, 244
PsuI	RGATCY	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	30, 286
Sau3AI	GATC	5 cut(s)	57, 100, 219, 226, 256
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	126, 367
SetI	ASST	6 cut(s)	42, 117, 207, 255, 267, 273
Sse9I	AATT	4 cut(s)	150, 189, 297, 391
SsiI	CCGC	3 cut(s)	30, 283, 288
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	2 cut(s)	272, 397
StyD4I	CCNGG	2 cut(s)	124, 365
TaaI	ACNGT	2 cut(s)	97, 242
TaqI	TCGA	4 cut(s)	45, 207, 225, 237
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	4 cut(s)	150, 189, 297, 391
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	183, 335
XapI	RAATTY	4 cut(s)	150, 189, 297, 391
XspI	CTAG	2 cut(s)	272, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.