Rh1BG197900

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003704
Physical Location & Seq
Reverse (-)
31479063 .. 31482782
3720 bp
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UTR
Exon/CDS
Intron
Rh1BG197900.1

Sequence Viewer

Length: 252 bp
ATGATCTTCGGCCTCGGCTCCAGCTCCACCGTCAAACACATCGTGGATCGCTTGGGCGAGCTTTTACAACCGGGAAAAGTTCACAGCATCATCGGAATTTCCGAGAACACCCACCAACAAGTCATCTCTCTTAGAATTCCATTATCCAACCTCAATGACTACCCGATCCTCGATCTCGCTAGTGACGGTGCCGACGAGGTGGACCCCCACTTCAACCTAGTCAAAGGCCGCTGCAGCGTGTCGGAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

83

Amino Acids

9.01

Weight (kDa)

5.34

Isoelectric Point (pI)

24.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 31 - 77 8.5e-11 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 54, 160
AcsI RAATTY 2 cut(s) 96, 135
AdeI CACNNNGTG 1 cut(s) 43
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 2 cut(s) 24, 61
AluI AGCT 2 cut(s) 24, 61
AlwI GGATC 2 cut(s) 54, 160
AoxI GGCC 2 cut(s) 10, 226
ApeKI GCWGC 2 cut(s) 231, 234
ApoI RAATTY 2 cut(s) 96, 135
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 218, 246
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 3 cut(s) 180, 218, 250
BfmI CTRYAG 1 cut(s) 232
BisI GCNGC 3 cut(s) 229, 232, 235
BlsI GCNGC 3 cut(s) 230, 233, 236
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 3 cut(s) 19, 190, 204
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 4
BpuMI CCSGG 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 13
BseXI GCAGC 2 cut(s) 218, 246
BshFI GGCC 2 cut(s) 12, 228
BshNI GGYRCC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 71
BsnI GGCC 2 cut(s) 12, 228
Bsp143I GATC 4 cut(s) 3, 46, 165, 172
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 12, 228
BspLI GGNNCC 3 cut(s) 19, 190, 204
BspMAI CTGCAG 1 cut(s) 236
BspPI GGATC 2 cut(s) 54, 160
BspT107I GGYRCC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 4 cut(s) 3, 46, 165, 172
Bst4CI ACNGT 2 cut(s) 31, 188
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 131
BstKTI GATC 4 cut(s) 6, 49, 168, 175
BstMBI GATC 4 cut(s) 3, 46, 165, 172
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 218, 246
BsuRI GGCC 2 cut(s) 12, 228
Cac8I GCNNGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 202
CviJI RGCY 5 cut(s) 12, 18, 24, 61, 228
CviKI_1 RGCY 5 cut(s) 12, 18, 24, 61, 228
DdeI CTNAG 1 cut(s) 131
DpnI GATC 4 cut(s) 5, 48, 167, 174
DpnII GATC 4 cut(s) 3, 46, 165, 172
DraIII CACNNNGTG 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 229, 232, 235
Fsp4HI GCNGC 3 cut(s) 229, 232, 235
FspBI CTAG 3 cut(s) 180, 218, 250
GluI GCNGC 3 cut(s) 229, 232, 235
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 2 cut(s) 12, 228
HapII CCGG 1 cut(s) 71
HpaII CCGG 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 82, 202
Hpy188I TCNGA 3 cut(s) 95, 103, 244
Hpy8I GTNNAC 2 cut(s) 82, 202
Hpy99I CGWCG 1 cut(s) 197
HpyCH4III ACNGT 2 cut(s) 31, 188
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 1 cut(s) 131
Kzo9I GATC 4 cut(s) 3, 46, 165, 172
LmnI GCTCC 2 cut(s) 23, 29
LpnPI CCDG 2 cut(s) 34, 84
Lsp1109I GCAGC 2 cut(s) 218, 246
LweI GCATC 1 cut(s) 96
MaeI CTAG 3 cut(s) 180, 218, 250
MaeIII GTNAC 1 cut(s) 182
MalI GATC 4 cut(s) 5, 48, 167, 174
MboI GATC 4 cut(s) 3, 46, 165, 172
MluCI AATT 2 cut(s) 96, 135
MmeI TCCRAC 2 cut(s) 171, 222
MnlI CCTC 4 cut(s) 23, 161, 179, 190
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 234
NciI CCSGG 1 cut(s) 72
NdeII GATC 4 cut(s) 3, 46, 165, 172
NlaIV GGNNCC 3 cut(s) 19, 190, 204
NmuCI GTSAC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 192
PkrI GCNGC 3 cut(s) 230, 233, 236
PspN4I GGNNCC 3 cut(s) 19, 190, 204
PspPI GGNCC 1 cut(s) 202
PstI CTGCAG 1 cut(s) 236
SatI GCNGC 3 cut(s) 229, 232, 235
Sau3AI GATC 4 cut(s) 3, 46, 165, 172
Sau96I GGNCC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 72
SetI ASST 5 cut(s) 26, 63, 153, 201, 219
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 202
Sse9I AATT 2 cut(s) 96, 135
SsiI CCGC 1 cut(s) 229
SspMI CTAG 3 cut(s) 180, 218, 250
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 31, 188
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 96, 135
TauI GCSGC 1 cut(s) 231
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 231, 234
Tsp45I GTSAC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 2 cut(s) 96, 135
XspI CTAG 3 cut(s) 180, 218, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.