Rorug07G0106000

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003704
Physical Location & Seq
Forward (+)
8312103 .. 8312810
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0106000.1

Sequence Viewer

Length: 708 bp
ATGAAGAAACTTCTTGTAGTAACCTTTGGTGATAATTCAGTTCTCCCAGCTGGTGTGTTTATACATACTCAATGGGATTCTCTTATTGTATGTACTTGTGACAATGGGCCATGGAGGGACGCCCTCCAGGAGGTCTTCAATGATGTGTTATTTTACAATGGGAAAATATATACATTGGAGATCCAAAAGTCCAAGACAATTGTTACTGCTTATAGCTTAAACGAACAATTGCAGCCCCTTCGAATTAGTAGCCGGTATGTTGGTCAAGACATAGAAACTGAGACAAGGGTAGAGGCCTGCTTGGTGGAGTCTCGTGGAGATCTCTTGCTCGTACAGAAACAATTCTCGCAGCGACAGCACACGACTGGATTCCAGGTCTTTAAACTACTGCTTGTAGAGGAGGATGGTTCCTTGCGCTGTGTCAAGTTGCAAAGCTTGGGGGATCAAGCATTGTTTTGGGATAGAGATGGCTGCATTTCTTTACCTGCAGTTGGAAAATTTTCACTATTTAAAGAGAATCACATATATTTCATCAACGTATTATATAAAATTGGCGTGTATTCTCTAAAATATGAGCGAATCAAACGATTCCACAATCCACCACAAAAGTTCTTCCGGCAAGAATCAACCTGGTTTGTCCCCACGATTAAGGATACAATTGTTGGTCTGAATAGGTCGGGTAAACAGGAACTAAATCCTCTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

235

Amino Acids

27.1

Weight (kDa)

8.53

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 19 - 188 1.9e-23 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AclWI GGATC 2 cut(s) 175, 450
AcsI RAATTY 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 2 cut(s) 94, 333
AfiI CCNNNNNNNGG 2 cut(s) 130, 491
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 3 cut(s) 126, 372, 629
AluBI AGCT 3 cut(s) 50, 216, 435
AluI AGCT 3 cut(s) 50, 216, 435
Alw26I GTCTC 2 cut(s) 275, 315
AlwI GGATC 2 cut(s) 175, 450
AoxI GGCC 2 cut(s) 107, 294
ApeKI GCWGC 3 cut(s) 232, 349, 471
ApoI RAATTY 1 cut(s) 497
Asp700I GAANNNNTTC 2 cut(s) 341, 499
AspLEI GCGC 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 41
AsuII TTCGAA 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 645, 678
BauI CACGAG 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 3 cut(s) 244, 361, 458
BccI CCATC 2 cut(s) 398, 461
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 3 cut(s) 128, 374, 631
BciVI GTATCC 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 275, 315
BfaI CTAG 1 cut(s) 701
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 493
BfuI GTATCC 1 cut(s) 646
BglII AGATCT 1 cut(s) 319
BisI GCNGC 3 cut(s) 233, 350, 472
BlsI GCNGC 3 cut(s) 234, 351, 473
Bme1390I CCNGG 3 cut(s) 128, 374, 631
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 3 cut(s) 128, 374, 631
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 110
Bpu14I TTCGAA 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 491
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 370
BseBI CCWGG 3 cut(s) 128, 374, 631
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 2 cut(s) 130, 491
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 244, 361, 458
BseYI CCCAGC 1 cut(s) 46
BshFI GGCC 2 cut(s) 109, 296
BsiSI CCGG 2 cut(s) 253, 616
BslFI GGGAC 2 cut(s) 131, 623
BslI CCNNNNNNNGG 2 cut(s) 130, 491
BsmAI GTCTC 2 cut(s) 275, 315
BsmFI GGGAC 2 cut(s) 131, 623
BsnI GGCC 2 cut(s) 109, 296
Bsp119I TTCGAA 1 cut(s) 241
Bsp143I GATC 3 cut(s) 180, 319, 442
Bsp19I CCATGG 1 cut(s) 110
BspANI GGCC 2 cut(s) 109, 296
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 409
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 2 cut(s) 175, 450
BspT104I TTCGAA 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 252
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 3 cut(s) 180, 319, 442
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 110
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 3 cut(s) 128, 374, 631
BstACI GRCGYC 1 cut(s) 120
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 409
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 3 cut(s) 183, 322, 445
BstMAI GTCTC 2 cut(s) 275, 315
BstMBI GATC 3 cut(s) 180, 319, 442
BstMWI GCNNNNNNNGC 1 cut(s) 355
BstNI CCWGG 3 cut(s) 128, 374, 631
BstSCI CCNGG 3 cut(s) 126, 372, 629
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 3 cut(s) 244, 361, 458
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 2 cut(s) 180, 319
BstYI RGATCY 2 cut(s) 180, 319
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 2 cut(s) 109, 296
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 1 cut(s) 409
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 298
CfoI GCGC 1 cut(s) 417
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 128
CsiI ACCWGGT 1 cut(s) 629
Csp6I GTAC 2 cut(s) 93, 332
CviAII CATG 1 cut(s) 111
CviJI RGCY 8 cut(s) 50, 109, 216, 235, 252, 296, 435, 471
CviKI_1 RGCY 8 cut(s) 50, 109, 216, 235, 252, 296, 435, 471
CviQI GTAC 2 cut(s) 93, 332
DdeI CTNAG 1 cut(s) 279
DpnI GATC 3 cut(s) 182, 321, 444
DpnII GATC 3 cut(s) 180, 319, 442
DraI TTTAAA 2 cut(s) 382, 511
Eco130I CCWWGG 1 cut(s) 110
Eco147I AGGCCT 1 cut(s) 296
EcoNI CCTNNNNNAGG 1 cut(s) 128
EcoRII CCWGG 3 cut(s) 126, 372, 629
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 1 cut(s) 114
FaqI GGGAC 2 cut(s) 131, 623
FatI CATG 1 cut(s) 110
Fnu4HI GCNGC 3 cut(s) 233, 350, 472
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 3 cut(s) 233, 350, 472
FspBI CTAG 1 cut(s) 701
GlaI GCGC 1 cut(s) 416
GluI GCNGC 3 cut(s) 233, 350, 472
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 2 cut(s) 109, 296
HapII CCGG 2 cut(s) 253, 616
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 417
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 114
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 7 cut(s) 77, 308, 369, 517, 579, 588, 623
HpaII CCGG 2 cut(s) 253, 616
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 683
Hpy188I TCNGA 1 cut(s) 669
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 683
HpyAV CCTTC 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 4 cut(s) 232, 430, 474, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 355
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 537
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 1 cut(s) 114
HspAI GCGC 1 cut(s) 415
Kzo9I GATC 3 cut(s) 180, 319, 442
Lsp1109I GCAGC 3 cut(s) 244, 361, 458
MabI ACCWGGT 1 cut(s) 629
MaeI CTAG 1 cut(s) 701
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 3 cut(s) 19, 98, 202
MalI GATC 3 cut(s) 182, 321, 444
MboI GATC 3 cut(s) 180, 319, 442
MboII GAAGA 3 cut(s) 16, 127, 604
MfeI CAATTG 3 cut(s) 198, 227, 657
MflI RGATCY 2 cut(s) 180, 319
MluCI AATT 8 cut(s) 34, 198, 227, 243, 341, 497, 549, 657
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 472
MnlI CCTC 7 cut(s) 108, 124, 134, 286, 391, 394, 708
MroXI GAANNNNTTC 2 cut(s) 341, 499
MseI TTAA 5 cut(s) 218, 381, 510, 648, 706
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 2 cut(s) 253, 616
MspR9I CCNGG 3 cut(s) 128, 374, 631
MunI CAATTG 3 cut(s) 198, 227, 657
MvaI CCWGG 3 cut(s) 128, 374, 631
MwoI GCNNNNNNNGC 1 cut(s) 355
NcoI CCATGG 1 cut(s) 110
NdeII GATC 3 cut(s) 180, 319, 442
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 98
NspV TTCGAA 1 cut(s) 241
PceI AGGCCT 1 cut(s) 296
PdmI GAANNNNTTC 2 cut(s) 341, 499
PfeI GAWTC 6 cut(s) 77, 369, 517, 579, 588, 623
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 3 cut(s) 234, 351, 473
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp6I CCWGG 3 cut(s) 126, 372, 629
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 3 cut(s) 126, 372, 629
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 2 cut(s) 180, 319
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 2 cut(s) 94, 333
RsaNI GTAC 2 cut(s) 93, 332
SaqAI TTAA 5 cut(s) 218, 381, 510, 648, 706
SatI GCNGC 3 cut(s) 233, 350, 472
Sau3AI GATC 3 cut(s) 180, 319, 442
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 128, 374, 631
SexAI ACCWGGT 1 cut(s) 629
SfcI CTRYAG 1 cut(s) 486
SfuI TTCGAA 1 cut(s) 241
Sse9I AATT 8 cut(s) 34, 198, 227, 243, 341, 497, 549, 657
SseBI AGGCCT 1 cut(s) 296
SspMI CTAG 1 cut(s) 701
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 3 cut(s) 126, 372, 629
StyI CCWWGG 1 cut(s) 110
TaiI ACGT 1 cut(s) 540
TaqI TCGA 1 cut(s) 241
TasI AATT 8 cut(s) 34, 198, 227, 243, 341, 497, 549, 657
TatI WGTACW 1 cut(s) 92
TfiI GAWTC 6 cut(s) 77, 369, 517, 579, 588, 623
Tru1I TTAA 5 cut(s) 218, 381, 510, 648, 706
Tru9I TTAA 5 cut(s) 218, 381, 510, 648, 706
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 3 cut(s) 232, 349, 471
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 17, 520
XagI CCTNNNNNAGG 1 cut(s) 128
XapI RAATTY 1 cut(s) 497
XmnI GAANNNNTTC 2 cut(s) 341, 499
XspI CTAG 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.