Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

26086783 .. 26090292

Gene Structure 3510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAAGCAACTGCTGCTGCCTACCACATTTTCCTTAATGTTTCTCTGCTTGGTTCCAAGTCCATTGAGGAGGAGGACCTCATGAGGTTCATGACTGAGGAAGAGGTGCTGAAGAGCTCTAACAGATTCGCTGGTAAGCCCGTGAAGGTCTACAACACTCGCAAAAGATTAATTTATAGTTTAACTGACACCGAAAAAGGTGTCATTTCGTTGAAGAGACAAAGCCCGGTACTGAAAGAGGAGAAGGATGCTGTGGTAGGATGTGAGTTTTCCGGCCTTGATCTAAATCTGCGTCACGAATCTGTGGTAATCAGCTTGTATGAGGGTGGTCTGCCAAGGCAATGTAAAAGCTGTGGCCTCCGGTTCAAGTGTGAAAAACAGCACAGCAGCCATATGGATTGGCATGTCAAGAAGAACCGGATGTCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACCTTTATGCAACTACAAGCATGTGGCTTGTTACTGATGTAGAGGCTGAGACTGAGGCATTACCTTCTGGTGTAGTTTTGTGCGTTGCTGACACCAGTGGCGTGGCGGAAAAGAAAAGGAAGACTAGTGATGAAGAAATGGTTGTTCCTGCGGACGAGGATCAGAGTAAATGTGCCTTATGCACAGACGCTTTTGTTGAGTTTTATAGTCATGAGAAAGATGAGTGGATGTATAAAGGTGCTGTTTACTTGAATGCGCCTCAGGGGCCAGCTCCGGAGATGGATCGGTCACAGTTGGGTCCTATAGTCCATGCCAAATGCTGGTCGGAGGGTAGTAGGAAACGTCTGCGGAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

270

Amino Acids

30.58

Weight (kDa)

8.32

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	195 - 261	2.4e-28	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	774
AccI	GTMKAC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	727
AciI	CCGC	4 cut(s)	433, 560, 605, 802
AclWI	GGATC	2 cut(s)	621, 744
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	774
AgsI	TTSAA	3 cut(s)	214, 367, 706
AhlI	ACTAGT	1 cut(s)	578
AloI	GAACNNNNNNTCC	2 cut(s)	407, 439
AluBI	AGCT	4 cut(s)	117, 315, 351, 725
AluI	AGCT	4 cut(s)	117, 315, 351, 725
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	211, 497
AlwI	GGATC	2 cut(s)	621, 744
Aor13HI	TCCGGA	1 cut(s)	727
AoxI	GGCC	3 cut(s)	274, 355, 719
ApeKI	GCWGC	3 cut(s)	14, 17, 387
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AseI	ATTAAT	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	3 cut(s)	76, 719, 752
AsuC2I	CCSGG	1 cut(s)	227
AvaII	GGWCC	2 cut(s)	76, 752
AxyI	CCTNAGG	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	4, 399
BccI	CCATC	1 cut(s)	727
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	211, 497
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	1 cut(s)	756
BglI	GCCNNNNNGGC	1 cut(s)	718
BisI	GCNGC	3 cut(s)	15, 18, 388
BlsI	GCNGC	3 cut(s)	16, 19, 389
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	2 cut(s)	76, 752
BmgT120I	GGNCC	3 cut(s)	76, 719, 752
BmiI	GGNNCC	3 cut(s)	55, 720, 753
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	335
BsaWI	WCCGGW	3 cut(s)	360, 417, 727
Bsc4I	CCNNNNNNNGG	1 cut(s)	774
Bse1I	ACTGG	1 cut(s)	549
Bse21I	CCTNAGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	727
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	4 cut(s)	253, 266, 426, 687
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	774
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	4 cut(s)	87, 492, 498, 728
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	3 cut(s)	83, 86, 254
BseXI	GCAGC	2 cut(s)	4, 399
BshFI	GGCC	3 cut(s)	276, 357, 721
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	5 cut(s)	227, 273, 361, 418, 728
BslI	CCNNNNNNNGG	1 cut(s)	774
BsmAI	GTCTC	2 cut(s)	211, 497
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	3 cut(s)	276, 357, 721
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	727
Bsp143I	GATC	3 cut(s)	280, 613, 736
BspACI	CCGC	4 cut(s)	433, 560, 605, 802
BspANI	GGCC	3 cut(s)	276, 357, 721
BspCNI	CTCAG	4 cut(s)	88, 493, 499, 727
BspEI	TCCGGA	1 cut(s)	727
BspHI	TCATGA	3 cut(s)	81, 90, 664
BspLI	GGNNCC	3 cut(s)	55, 720, 753
BspPI	GGATC	2 cut(s)	621, 744
BspQI	GCTCTTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	3 cut(s)	280, 613, 736
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	747
Bst6I	CTCTTC	3 cut(s)	96, 107, 209
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	437, 723
BstDEI	CTNAG	4 cut(s)	96, 501, 507, 714
BstF5I	GGATG	4 cut(s)	253, 266, 426, 687
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	3 cut(s)	283, 616, 739
BstMAI	GTCTC	2 cut(s)	211, 497
BstMBI	GATC	3 cut(s)	280, 613, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 718
BstNSI	RCATGY	2 cut(s)	407, 478
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	756
BstV1I	GCAGC	2 cut(s)	4, 399
BstV2I	GAAGAC	1 cut(s)	581
BstXI	CCANNNNNNTGG	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	714
BsuRI	GGCC	3 cut(s)	276, 357, 721
BtsCI	GGATG	4 cut(s)	253, 266, 426, 687
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	2 cut(s)	437, 723
CciI	TCATGA	3 cut(s)	81, 90, 664
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	3 cut(s)	76, 719, 752
CseI	GACGC	2 cut(s)	281, 650
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	6 cut(s)	82, 91, 404, 475, 665, 764
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	4 cut(s)	96, 501, 507, 714
DpnI	GATC	3 cut(s)	282, 615, 738
DpnII	GATC	3 cut(s)	280, 613, 736
Eam1104I	CTCTTC	3 cut(s)	96, 107, 209
EarI	CTCTTC	3 cut(s)	96, 107, 209
EciI	GGCGGA	1 cut(s)	575
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	76, 752
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	2 cut(s)	76, 752
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	6 cut(s)	85, 94, 407, 478, 668, 767
FatI	CATG	6 cut(s)	81, 90, 403, 474, 664, 763
FauI	CCCGC	1 cut(s)	440
FauNDI	CATATG	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	15, 18, 388
FokI	GGATG	4 cut(s)	260, 273, 433, 694
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	15, 18, 388
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	3 cut(s)	15, 18, 388
HaeIII	GGCC	3 cut(s)	276, 357, 721
HapII	CCGG	5 cut(s)	227, 273, 361, 418, 728
HgaI	GACGC	2 cut(s)	281, 650
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	6 cut(s)	85, 94, 407, 478, 668, 767
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HinfI	GANTC	2 cut(s)	126, 299
HpaII	CCGG	5 cut(s)	227, 273, 361, 418, 728
Hpy166II	GTNNAC	2 cut(s)	151, 700
Hpy188I	TCNGA	2 cut(s)	618, 781
Hpy188III	TCNNGA	6 cut(s)	82, 91, 296, 409, 665, 728
Hpy8I	GTNNAC	2 cut(s)	151, 700
HpyAV	CCTTC	3 cut(s)	139, 238, 528
HpyCH4III	ACNGT	1 cut(s)	747
HpyCH4IV	ACGT	1 cut(s)	796
HpyCH4V	TGCA	2 cut(s)	464, 636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 718
HpyF3I	CTNAG	4 cut(s)	96, 501, 507, 714
HpySE526I	ACGT	1 cut(s)	796
Hsp92II	CATG	6 cut(s)	85, 94, 407, 478, 668, 767
HspAI	GCGC	1 cut(s)	710
Kpn2I	TCCGGA	1 cut(s)	727
Kzo9I	GATC	3 cut(s)	280, 613, 736
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	2 cut(s)	4, 399
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	1 cut(s)	796
MaeIII	GTNAC	4 cut(s)	293, 452, 484, 741
MalI	GATC	3 cut(s)	282, 615, 738
MboI	GATC	3 cut(s)	280, 613, 736
MboII	GAAGA	6 cut(s)	113, 124, 226, 424, 586, 599
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	759
MroI	TCCGGA	1 cut(s)	727
MseI	TTAA	3 cut(s)	36, 170, 182
MspI	CCGG	5 cut(s)	227, 273, 361, 418, 728
MspR9I	CCNGG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	712
MwoI	GCNNNNNNNGC	2 cut(s)	14, 718
NciI	CCSGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	3 cut(s)	280, 613, 736
NlaIII	CATG	6 cut(s)	85, 94, 407, 478, 668, 767
NlaIV	GGNNCC	3 cut(s)	55, 720, 753
NmuCI	GTSAC	2 cut(s)	293, 741
NspI	RCATGY	2 cut(s)	407, 478
PagI	TCATGA	3 cut(s)	81, 90, 664
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	2 cut(s)	126, 299
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	3 cut(s)	16, 19, 389
PpuMI	RGGWCCY	2 cut(s)	76, 752
PshBI	ATTAAT	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	2 cut(s)	76, 752
PspN4I	GGNNCC	3 cut(s)	55, 720, 753
PspPI	GGNCC	3 cut(s)	76, 719, 752
PspPPI	RGGWCCY	2 cut(s)	76, 752
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	36, 170, 182
SatI	GCNGC	3 cut(s)	15, 18, 388
Sau3AI	GATC	3 cut(s)	280, 613, 736
Sau96I	GGNCC	3 cut(s)	76, 719, 752
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	2 cut(s)	76, 752
SpeI	ACTAGT	1 cut(s)	578
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	4 cut(s)	433, 560, 605, 802
SspMI	CTAG	1 cut(s)	579
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	747
TaiI	ACGT	1 cut(s)	799
TaqII	GACCGA	1 cut(s)	729
TasI	AATT	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	126, 299
Tru1I	TTAA	3 cut(s)	36, 170, 182
Tru9I	TTAA	3 cut(s)	36, 170, 182
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	2 cut(s)	293, 741
TseI	GCWGC	3 cut(s)	14, 17, 387
Tsp45I	GTSAC	2 cut(s)	293, 741
TspDTI	ATGAA	2 cut(s)	79, 600
TspRI	CASTG	1 cut(s)	556
Van91I	CCANNNNNTGG	1 cut(s)	774
VpaK11BI	GGWCC	2 cut(s)	76, 752
VspI	ATTAAT	1 cut(s)	170
XceI	RCATGY	2 cut(s)	407, 478
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.