RchiOBHm_Chr2g0141971

Neprosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004413
Physical Location & Seq
Reverse (-)
59508847 .. 59509545
699 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGCAAAGTAGTGATTTTATAAGTCTTTTGCAGAGTGACAGCGGTGATGTTACAGATTGTGTTGAGATTTACAAACAACCTGCTTTTGACCATCCCCTTCTCAGCAATCACACTATAGAGATGGAACCCAGTTCAACTCCAAGTGGAGTAAAACCAATAAACAACCAAGCCAAGCTTATTCAAGATTGGTTCAAGAATGGAGAATGCCCTGACGGAACGATTCCCATCATTAGGCCACAAAGATATGATTATAATTGGATAGCCCCAAGGAAGCTTGATAGCAACTTTGGTCTTATGAAAATCATGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neprosin Neprosin_AP

Protein Analysis

103

Amino Acids

11.74

Weight (kDa)

5.17

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin_AP PF14365 10 - 83 2e-24 Neprosin activation peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 20, 252
Acc36I ACCTGC 1 cut(s) 88
AciI CCGC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 3 cut(s) 135, 182, 193
AluBI AGCT 2 cut(s) 175, 274
AluI AGCT 2 cut(s) 175, 274
AoxI GGCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 56
BccI CCATC 3 cut(s) 99, 115, 233
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 91
BseJI GATNNNNATC 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 129
BshFI GGCC 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 231
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 235
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 303
CviAII CATG 1 cut(s) 304
CviJI RGCY 5 cut(s) 170, 175, 235, 263, 274
CviKI_1 RGCY 5 cut(s) 170, 175, 235, 263, 274
DdeI CTNAG 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 1 cut(s) 307
FaiI YATR 6 cut(s) 20, 116, 246, 252, 296, 305
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 1 cut(s) 303
FokI GGATG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 235
Hin1II CATG 1 cut(s) 307
HindIII AAGCTT 2 cut(s) 173, 272
HinfI GANTC 1 cut(s) 220
HphI GGTGA 1 cut(s) 56
Hpy188III TCNNGA 3 cut(s) 182, 193, 304
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 4, 31
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 1 cut(s) 307
LpnPI CCDG 3 cut(s) 93, 142, 222
MaeIII GTNAC 2 cut(s) 35, 49
MluCI AATT 1 cut(s) 253
MnlI CCTC 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 209
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 35
PagI TCATGA 1 cut(s) 303
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 220
PsiI TTATAA 2 cut(s) 20, 252
PspN4I GGNNCC 1 cut(s) 126
SetI ASST 4 cut(s) 82, 177, 276, 311
SfcI CTRYAG 1 cut(s) 114
Sse9I AATT 1 cut(s) 253
SsiI CCGC 1 cut(s) 42
StyI CCWWGG 1 cut(s) 266
TasI AATT 1 cut(s) 253
TfiI GAWTC 1 cut(s) 220
TseFI GTSAC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.