RchiOBHm_Chr2g0147741

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002435
Physical Location & Seq
Forward (+)
65314712 .. 65315002
291 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGGCCAAGGTTCCCATGAACCCATTTCTCCTTCTCAGCAAGAGATGGTATAAGGTAGCTGCAGAGAGTACTAGTACTGAAAGAGTGCAGCCGGCAGTGTCAACAATGAGGAAGATGGCAACAACAGAATCCTCCGGCAGCAGCGGTCGAGCTGTCGCAGATGATCAGGAGAAGAAGAAAGTGTTTTGGATGAGAGACCCAAAGACGGGGAACTGGATTCCAGAGAATCACTTTGAAGAGATTGATGCTGCAGAGCTCAGGGAGAAGCTCCTCAACAAGCACAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

96

Amino Acids

10.99

Weight (kDa)

9.52

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 12 - 94 1.8e-18 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 70, 76
AfiI CCNNNNNNNGG 2 cut(s) 205, 206
AgsI TTSAA 1 cut(s) 236
AhlI ACTAGT 1 cut(s) 71
AluBI AGCT 4 cut(s) 59, 152, 256, 268
AluI AGCT 4 cut(s) 59, 152, 256, 268
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 189
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 5 cut(s) 59, 88, 138, 141, 248
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 5 cut(s) 46, 100, 150, 153, 235
BccI CCATC 2 cut(s) 39, 109
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 189
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 2 cut(s) 60, 249
BisI GCNGC 5 cut(s) 60, 89, 139, 142, 249
BlsI GCNGC 5 cut(s) 61, 90, 140, 143, 250
BmcAI AGTACT 2 cut(s) 70, 76
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 206
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 205, 206
BseMII CTCAG 2 cut(s) 49, 271
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 5 cut(s) 46, 100, 150, 153, 235
BsgI GTGCAG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 2 cut(s) 92, 135
BslI CCNNNNNNNGG 2 cut(s) 205, 206
BsmAI GTCTC 1 cut(s) 189
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 48, 270
BspLI GGNNCC 1 cut(s) 12
BspMAI CTGCAG 2 cut(s) 64, 253
BspTNI GGTCTC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 6
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 35, 257
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 60, 249
BstV1I GCAGC 5 cut(s) 46, 100, 150, 153, 235
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 91
Csp6I GTAC 2 cut(s) 69, 75
CviAII CATG 1 cut(s) 16
CviJI RGCY 6 cut(s) 5, 59, 91, 152, 256, 268
CviKI_1 RGCY 6 cut(s) 5, 59, 91, 152, 256, 268
CviQI GTAC 2 cut(s) 69, 75
DdeI CTNAG 2 cut(s) 35, 257
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 19
FaiI YATR 2 cut(s) 17, 51
FatI CATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 5 cut(s) 60, 89, 139, 142, 249
FokI GGATG 1 cut(s) 202
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 5 cut(s) 60, 89, 139, 142, 249
FspBI CTAG 1 cut(s) 72
GluI GCNGC 5 cut(s) 60, 89, 139, 142, 249
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 92, 135
Hin1II CATG 1 cut(s) 19
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 3 cut(s) 128, 217, 226
HpaII CCGG 2 cut(s) 92, 135
Hpy166II GTNNAC 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 167, 221
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 62, 88, 251
HpyF3I CTNAG 2 cut(s) 35, 257
Hsp92II CATG 1 cut(s) 19
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 6 cut(s) 105, 148, 152, 199, 234, 244
Lsp1109I GCAGC 5 cut(s) 46, 100, 150, 153, 235
LweI GCATC 1 cut(s) 235
MaeI CTAG 1 cut(s) 72
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 4 cut(s) 124, 184, 187, 248
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 102, 142, 281
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 91
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 289
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 2 cut(s) 92, 135
NaeI GCCGGC 1 cut(s) 93
NdeII GATC 1 cut(s) 163
NgoMIV GCCGGC 1 cut(s) 91
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 12
PdiI GCCGGC 1 cut(s) 93
PfeI GAWTC 3 cut(s) 128, 217, 226
PkrI GCNGC 5 cut(s) 61, 90, 140, 143, 250
Psp124BI GAGCTC 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 12
PstI CTGCAG 2 cut(s) 64, 253
RsaI GTAC 2 cut(s) 70, 76
RsaNI GTAC 2 cut(s) 69, 75
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 289
SatI GCNGC 5 cut(s) 60, 89, 139, 142, 249
Sau3AI GATC 1 cut(s) 163
ScaI AGTACT 2 cut(s) 70, 76
SduI GDGCHC 1 cut(s) 258
SetI ASST 7 cut(s) 12, 57, 61, 154, 258, 270, 288
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 2 cut(s) 60, 249
SpeI ACTAGT 1 cut(s) 71
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 72
SstI GAGCTC 1 cut(s) 258
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 1 cut(s) 148
TatI WGTACW 2 cut(s) 68, 74
TfiI GAWTC 3 cut(s) 128, 217, 226
Tru1I TTAA 1 cut(s) 289
Tru9I TTAA 1 cut(s) 289
TscAI CASTG 1 cut(s) 102
TseI GCWGC 5 cut(s) 59, 88, 138, 141, 248
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 1 cut(s) 102
XspI CTAG 1 cut(s) 72
ZrmI AGTACT 2 cut(s) 70, 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.