Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Forward (+)

76037412 .. 76039436

Gene Structure 2025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCTTTTTTTTTTTTTGAAATCTCTAGATCACAGCGATGGGGAGACTCATTTTCCAGTCCCCATAAATAAGGAGCGGCTGAATGATGTTTCTCCAAGCAAGAAAAGGCTCGATGTAAATAGGGATTCTGCCAAAGAACCAAAACAAGGTGCTTTTCCAACAAGAGAGTACCTTACCACAACAAGAAGACCTCAGAAGCTCTCTCGGTGGAACATAAACCCTGCGCAATCAAATTTTGTGCATGAAAATGATGCAATGAATAACGGAATTGGGAGTCCAAAGCTCTTAGCAAAGGACGACAAGCATGACAGGAGCAAGGCTGCTTCCTCTAGCGTCGTCTCTGCTGATGTGATAAAGAGTTCAGAGTCAGGACCTGTGGTACCCTCAACCAGCATGGCAGCTCACGCAGTGGATACTGAAAATGACATTGAACTGGACGTTAAAGTTGAGAATGTTGAGAATGTTGAGAATGCTTCTAGAAGAATCGAGGGGGAACCTACATATGAGAGCGGGATCTTTCCATTTCCACTTCCTCCACCACCCCCATTCCCTCCGAAGAACTTTCCACAGCATGAGGGCAATGATGAGATTGTAGATATTGTGGATGGAGTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

205

Amino Acids

22.71

Weight (kDa)

5.27

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	225
Acc65I	GGTACC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	379
AccBSI	CCGCTC	2 cut(s)	76, 510
AciI	CCGC	2 cut(s)	76, 510
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	232
AdeI	CACNNNGTG	1 cut(s)	409
AfaI	GTAC	2 cut(s)	170, 381
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	19, 431
AluBI	AGCT	3 cut(s)	199, 283, 401
AluI	AGCT	3 cut(s)	199, 283, 401
Alw26I	GTCTC	2 cut(s)	38, 343
AlwI	GGATC	1 cut(s)	521
AlwNI	CAGNNNCTG	1 cut(s)	374
ApeKI	GCWGC	2 cut(s)	320, 398
ApoI	RAATTY	1 cut(s)	232
Asp718I	GGTACC	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	307, 410
BccI	CCATC	2 cut(s)	32, 599
BciVI	GTATCC	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	38, 343
BfaI	CTAG	3 cut(s)	26, 330, 477
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	3 cut(s)	77, 321, 399
BlsI	GCNGC	3 cut(s)	78, 322, 400
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	381, 495
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	56, 438
Bse3DI	GCAATG	2 cut(s)	261, 586
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	2 cut(s)	261, 586
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	2 cut(s)	56, 438
BseXI	GCAGC	2 cut(s)	307, 410
BshNI	GGYRCC	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	38, 343
BsmBI	CGTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	475
Bsp143I	GATC	2 cut(s)	28, 513
BspACI	CCGC	2 cut(s)	76, 510
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	381, 495
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	379
BsrBI	CCGCTC	2 cut(s)	76, 510
BsrDI	GCAATG	2 cut(s)	261, 586
BsrI	ACTGG	2 cut(s)	56, 438
BssMI	GATC	2 cut(s)	28, 513
BstDEI	CTNAG	2 cut(s)	192, 286
BstF5I	GGATG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	31, 516
BstMAI	GTCTC	2 cut(s)	38, 343
BstMBI	GATC	2 cut(s)	28, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	307, 410
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	513
BsuI	GTATCC	1 cut(s)	406
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	610
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	169, 380
CviAII	CATG	4 cut(s)	242, 305, 394, 572
CviJI	RGCY	6 cut(s)	79, 109, 199, 283, 320, 401
CviKI_1	RGCY	6 cut(s)	79, 109, 199, 283, 320, 401
CviQI	GTAC	2 cut(s)	169, 380
DdeI	CTNAG	2 cut(s)	192, 286
DpnI	GATC	2 cut(s)	30, 515
DpnII	GATC	2 cut(s)	28, 513
DraIII	CACNNNGTG	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	4 cut(s)	245, 308, 397, 575
FaiI	YATR	8 cut(s)	65, 215, 243, 306, 395, 502, 504, 573
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	4 cut(s)	241, 304, 393, 571
FauI	CCCGC	1 cut(s)	503
FauNDI	CATATG	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	77, 321, 399
Fsp4HI	GCNGC	3 cut(s)	77, 321, 399
FspBI	CTAG	3 cut(s)	26, 330, 477
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	3 cut(s)	77, 321, 399
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	4 cut(s)	245, 308, 397, 575
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	5 cut(s)	46, 125, 274, 365, 483
Hpy188I	TCNGA	3 cut(s)	195, 364, 555
Hpy188III	TCNNGA	3 cut(s)	26, 369, 477
Hpy99I	CGWCG	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	2 cut(s)	241, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	2 cut(s)	192, 286
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	4 cut(s)	245, 308, 397, 575
HspAI	GCGC	1 cut(s)	224
KpnI	GGTACC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	28, 513
LmnI	GCTCC	2 cut(s)	73, 312
LpnPI	CCDG	7 cut(s)	69, 234, 295, 354, 387, 403, 419
Lsp1109I	GCAGC	2 cut(s)	307, 410
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	26, 330, 477
MaeII	ACGT	1 cut(s)	438
MalI	GATC	2 cut(s)	30, 515
MbiI	CCGCTC	2 cut(s)	76, 510
MboI	GATC	2 cut(s)	28, 513
MboII	GAAGA	3 cut(s)	198, 492, 568
MflI	RGATCY	1 cut(s)	513
MluCI	AATT	2 cut(s)	232, 267
MlyI	GAGTC	3 cut(s)	40, 283, 374
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	7 cut(s)	201, 337, 394, 481, 543, 561, 568
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	2 cut(s)	36, 246
Mva1269I	GAATGC	1 cut(s)	475
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	2 cut(s)	28, 513
NlaIII	CATG	4 cut(s)	245, 308, 397, 575
NlaIV	GGNNCC	2 cut(s)	381, 495
NsbI	TGCGCA	1 cut(s)	225
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	125, 483
PkrI	GCNGC	3 cut(s)	78, 322, 400
PleI	GAGTC	3 cut(s)	40, 282, 373
PpsI	GAGTC	3 cut(s)	40, 282, 373
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	381, 495
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	513
RsaI	GTAC	2 cut(s)	170, 381
RsaNI	GTAC	2 cut(s)	169, 380
RseI	CAYNNNNRTG	2 cut(s)	36, 246
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	3 cut(s)	77, 321, 399
Sau3AI	GATC	2 cut(s)	28, 513
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	3 cut(s)	40, 283, 374
SetI	ASST	9 cut(s)	151, 174, 193, 201, 285, 376, 403, 441, 499
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	36, 246
Sse9I	AATT	2 cut(s)	232, 267
SsiI	CCGC	2 cut(s)	76, 510
SspMI	CTAG	3 cut(s)	26, 330, 477
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	2 cut(s)	111, 486
TasI	AATT	2 cut(s)	232, 267
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	125, 483
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	2 cut(s)	320, 398
TspDTI	ATGAA	2 cut(s)	258, 272
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	232
XbaI	TCTAGA	2 cut(s)	25, 476
XspI	CTAG	3 cut(s)	26, 330, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.