Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Reverse (-)

16566815 .. 16570346

Gene Structure 3532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCTACAATTTGCTTATATAATAGGTAGAGGAGAAAAGTTGTCGGAGGATTTCTATTTTCGTCACGCACCAACAGAAACACAGAATCTAAGAACTTTATATATTTTTGCCACCACTTTAATGGTCATCCTTTGTTCTTTAAGTAAATTTTTAGCACACATCATGACTGACAAATTTACTACTGCCTTTTTTTGGGTGAAGATTTCTTTTGAACCCCGTGGAATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

76

Amino Acids

8.96

Weight (kDa)

8.93

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	146, 173
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	212
ApoI	RAATTY	2 cut(s)	146, 173
AsuHPI	GGTGA	1 cut(s)	208
BfaI	CTAG	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	126
CciI	TCATGA	1 cut(s)	162
CviAII	CATG	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	89
FaeI	CATG	1 cut(s)	166
FaiI	YATR	5 cut(s)	18, 20, 100, 102, 164
FatI	CATG	1 cut(s)	162
FokI	GGATG	1 cut(s)	113
FspBI	CTAG	1 cut(s)	229
Hin1II	CATG	1 cut(s)	166
HinfI	GANTC	2 cut(s)	85, 222
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	166
MaeI	CTAG	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	62
MboII	GAAGA	2 cut(s)	211, 217
MluCI	AATT	3 cut(s)	8, 146, 173
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	2 cut(s)	23, 40
MseI	TTAA	2 cut(s)	119, 140
MslI	CAYNNNNRTG	1 cut(s)	119
NlaIII	CATG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	85, 222
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	119, 140
SetI	ASST	1 cut(s)	28
SgeI	CNNG	2 cut(s)	77, 175
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	8, 146, 173
SspMI	CTAG	1 cut(s)	229
TasI	AATT	3 cut(s)	8, 146, 173
TfiI	GAWTC	2 cut(s)	85, 222
Tru1I	TTAA	2 cut(s)	119, 140
Tru9I	TTAA	2 cut(s)	119, 140
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	146, 173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XspI	CTAG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.