RchiOBHm_Chr1g0329731

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002703
Physical Location & Seq
Reverse (-)
19464295 .. 19466272
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
ATGAATTATGGCGCTGTTGGGAATGGCCAAGTTGATGATACACAAGCCTTTCTAAAAGCATGGGGAGATGTTTGTGGATCCACTCAAGGCATCCCTACACTTATTATACCAAAGGGCAACACTTTCTTGCTCAATTCTGTGGAGTTTAAAGGGCCTTGCAGGGCTGCAAGTGTAAATTTCCAGCTAAGTGGGAACATTGTTGCACCAAATAATATGAATGCTTGGAAAGACAAGGACCAATGGGTTCAGTTTGATGATGTTCAAGGTCTGATAATCAATGGAGGAGGTCAAATTGATGGTCAAGGTCAGGTTTGGTGGAAAGTTTGCGACACTACAAATTGCCAACGACCAACTGCTCTTCATATTAGCAAGTGTGATGGTCTCCGCTTGAGTAATATTACACATATTAATAGTGCGAGAAACCATATAAGCATCAGCGGCTGCAATGGCGTTCAAATTTCTGATATCCTTATTAGGGCTCCTGATGAAAGTCCAAACACTGATGGAATTGACATCTCTGCATCAACCAATATTAACATTCACAATTCTTTTATAGGCACTGGTGACGACTGTATTGCAATCATTTCTGGTTCATCTCATATCAACATTACTAATGTTATGTGTGGTCCAGGCCATGGTATAAGTGTTGGAAGTCTTGGTAAGCAAGGTTCTTATAGCACAGTGGAAGATGTGCAAGTGAGAAACTGCACCTTCAACGGAACACAAAATGGAGCAAGAATCAAGACATGGCAAGGCGGGTCAGGGTATGCTAGGAACATCAGTTTTGAGGATATCATAATTCAAGCTGCCAAGAACCCTATCATTATAGACCAGAAGTATACTGATAATCTCTCTACTGGAACTGGAACTGGAACCCTGCTTGACCAAGAAAATGCTGTACAAGTGAGCGATGTGACATTCCGTAACATTCGGGGATCTGTTGCTGGGGATACAGCCGTTACTTTGGATTGTGACGATCAAATTGGTTGCAAAAACATTGTAATGGATCACATAGACTTAACTTCATCTGTTCCTGGCAAGAAGGTTTCTGCCCACTGCAAGAACGTTAAAGGATTATCTACTTTATTATCTCCCAGTGTGTCGTGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

370

Amino Acids

39.26

Weight (kDa)

5.55

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 29 - 357 3.9e-93 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 635
AccI GTMKAC 1 cut(s) 839
AciI CCGC 3 cut(s) 385, 438, 756
AclI AACGTT 1 cut(s) 1065
AclWI GGATC 4 cut(s) 72, 85, 943, 1014
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 2 cut(s) 175, 456
AfaI GTAC 1 cut(s) 900
AfiI CCNNNNNNNGG 2 cut(s) 475, 635
AgsI TTSAA 4 cut(s) 263, 455, 715, 803
AjnI CCWGG 2 cut(s) 628, 1033
AluBI AGCT 2 cut(s) 184, 806
AluI AGCT 2 cut(s) 184, 806
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 4 cut(s) 72, 85, 943, 1014
AlwNI CAGNNNCTG 1 cut(s) 441
AoxI GGCC 3 cut(s) 25, 152, 631
ApeKI GCWGC 3 cut(s) 164, 441, 806
ApoI RAATTY 2 cut(s) 175, 456
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AseI ATTAAT 1 cut(s) 408
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 3 cut(s) 152, 235, 626
AsuHPI GGTGA 1 cut(s) 575
AvaII GGWCC 2 cut(s) 235, 626
BaeI ACNNNNGTAYC 2 cut(s) 942, 975
BalI TGGCCA 1 cut(s) 27
BamHI GGATCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 481
BbvI GCAGC 3 cut(s) 151, 428, 793
BccI CCATC 3 cut(s) 290, 371, 497
BceAI ACGGC 1 cut(s) 941
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BciT130I CCWGG 2 cut(s) 630, 1035
BciVI GTATCC 1 cut(s) 943
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 1 cut(s) 771
BfoI RGCGCY 1 cut(s) 15
BfuI GTATCC 1 cut(s) 943
BisI GCNGC 4 cut(s) 165, 439, 442, 807
BlsI GCNGC 4 cut(s) 166, 440, 443, 808
Bme1390I CCNGG 2 cut(s) 630, 1035
Bme18I GGWCC 2 cut(s) 235, 626
BmgT120I GGNCC 3 cut(s) 152, 235, 626
BmiI GGNNCC 3 cut(s) 79, 480, 874
BmrFI CCNGG 2 cut(s) 630, 1035
BmrI ACTGGG 1 cut(s) 1089
BmsI GCATC 3 cut(s) 99, 441, 530
BmuI ACTGGG 1 cut(s) 1089
BpuEI CTTGAG 2 cut(s) 69, 409
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 634
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 635
Bse1I ACTGG 5 cut(s) 565, 862, 868, 874, 1095
Bse3DI GCAATG 1 cut(s) 451
BseBI CCWGG 2 cut(s) 630, 1035
BseDI CCNNGG 1 cut(s) 634
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 475, 635
BseMI GCAATG 1 cut(s) 451
BseNI ACTGG 5 cut(s) 565, 862, 868, 874, 1095
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 3 cut(s) 151, 428, 793
BseYI CCCAGC 1 cut(s) 944
BsgI GTGCAG 1 cut(s) 691
BshFI GGCC 3 cut(s) 27, 154, 633
BslI CCNNNNNNNGG 2 cut(s) 475, 635
BsmAI GTCTC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 27, 154, 633
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 481
Bsp1407I TGTACA 1 cut(s) 898
Bsp143I GATC 4 cut(s) 77, 935, 976, 1006
Bsp19I CCATGG 1 cut(s) 634
BspACI CCGC 3 cut(s) 385, 438, 756
BspANI GGCC 3 cut(s) 27, 154, 633
BspLI GGNNCC 3 cut(s) 79, 480, 874
BspPI GGATC 4 cut(s) 72, 85, 943, 1014
BspQI GCTCTTC 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 451
BsrGI TGTACA 1 cut(s) 898
BsrI ACTGG 5 cut(s) 565, 862, 868, 874, 1095
BssECI CCNNGG 1 cut(s) 634
BssMI GATC 4 cut(s) 77, 935, 976, 1006
BssNAI GTATAC 1 cut(s) 840
BssT1I CCWWGG 1 cut(s) 634
Bst1107I GTATAC 1 cut(s) 840
Bst2UI CCWGG 2 cut(s) 630, 1035
Bst4CI ACNGT 2 cut(s) 572, 682
Bst6I CTCTTC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 898
BstDEI CTNAG 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 634
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 4 cut(s) 80, 938, 979, 1009
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 4 cut(s) 77, 935, 976, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 438, 447
BstNI CCWGG 2 cut(s) 630, 1035
BstSCI CCNGG 2 cut(s) 628, 1033
BstV1I GCAGC 3 cut(s) 151, 428, 793
BstX2I RGATCY 2 cut(s) 77, 935
BstXI CCANNNNNNTGG 1 cut(s) 188
BstYI RGATCY 2 cut(s) 77, 935
BstZ17I GTATAC 1 cut(s) 840
BsuI GTATCC 1 cut(s) 943
BsuRI GGCC 3 cut(s) 27, 154, 633
BtgI CCRYGG 1 cut(s) 634
BtgZI GCGATG 1 cut(s) 924
BtsCI GGATG 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 5 cut(s) 498, 558, 687, 1054, 1102
CaiI CAGNNNCTG 1 cut(s) 441
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 3 cut(s) 152, 235, 626
Csp6I GTAC 1 cut(s) 899
CviAII CATG 3 cut(s) 60, 635, 747
CviQI GTAC 1 cut(s) 899
DdeI CTNAG 1 cut(s) 185
DpnI GATC 4 cut(s) 79, 937, 978, 1008
DpnII GATC 4 cut(s) 77, 935, 976, 1006
DraI TTTAAA 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 481
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 2 cut(s) 466, 793
Eco47I GGWCC 2 cut(s) 235, 626
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 628, 1033
EcoRV GATATC 2 cut(s) 466, 793
EcoT14I CCWWGG 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 3 cut(s) 63, 638, 750
FatI CATG 3 cut(s) 59, 634, 746
FauI CCCGC 1 cut(s) 749
FblI GTMKAC 1 cut(s) 839
Fnu4HI GCNGC 4 cut(s) 165, 439, 442, 807
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 165, 439, 442, 807
FspBI CTAG 1 cut(s) 771
GlaI GCGC 1 cut(s) 13
GluI GCNGC 4 cut(s) 165, 439, 442, 807
GsaI CCCAGC 1 cut(s) 948
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 3 cut(s) 27, 154, 633
HhaI GCGC 1 cut(s) 14
Hin1II CATG 3 cut(s) 63, 638, 750
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 1 cut(s) 738
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 1 cut(s) 840
Hpy188I TCNGA 2 cut(s) 270, 463
Hpy188III TCNNGA 2 cut(s) 482, 742
Hpy8I GTNNAC 1 cut(s) 840
HpyAV CCTTC 2 cut(s) 721, 1036
HpyCH4III ACNGT 2 cut(s) 572, 682
HpyCH4IV ACGT 1 cut(s) 1065
HpyF10VI GCNNNNNNNGC 2 cut(s) 438, 447
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 1065
Hsp92II CATG 3 cut(s) 63, 638, 750
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 4 cut(s) 77, 935, 976, 1006
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 484, 731
Lsp1109I GCAGC 3 cut(s) 151, 428, 793
LweI GCATC 3 cut(s) 99, 441, 530
MaeI CTAG 1 cut(s) 771
MaeII ACGT 1 cut(s) 1065
MaeIII GTNAC 5 cut(s) 563, 913, 923, 958, 971
MalI GATC 4 cut(s) 79, 937, 978, 1008
MboI GATC 4 cut(s) 77, 935, 976, 1006
MboII GAAGA 2 cut(s) 350, 698
MflI RGATCY 2 cut(s) 77, 935
MhlI GDGCHC 1 cut(s) 481
MlsI TGGCCA 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 628
MnlI CCTC 3 cut(s) 275, 278, 781
Mox20I TGGCCA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 27
MseI TTAA 6 cut(s) 147, 408, 534, 1019, 1068, 1111
MslI CAYNNNNRTG 1 cut(s) 1001
Msp20I TGGCCA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 438
MspR9I CCNGG 2 cut(s) 630, 1035
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 2 cut(s) 630, 1035
MwoI GCNNNNNNNGC 2 cut(s) 438, 447
NcoI CCATGG 1 cut(s) 634
NdeII GATC 4 cut(s) 77, 935, 976, 1006
NlaIII CATG 3 cut(s) 63, 638, 750
NlaIV GGNNCC 3 cut(s) 79, 480, 874
NmuCI GTSAC 3 cut(s) 563, 913, 971
PciSI GCTCTTC 1 cut(s) 363
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 738
PflMI CCANNNNNTGG 1 cut(s) 635
PkrI GCNGC 4 cut(s) 166, 440, 443, 808
PshBI ATTAAT 1 cut(s) 408
Psp1406I AACGTT 1 cut(s) 1065
Psp6I CCWGG 2 cut(s) 628, 1033
PspFI CCCAGC 1 cut(s) 944
PspGI CCWGG 2 cut(s) 628, 1033
PspN4I GGNNCC 3 cut(s) 79, 480, 874
PspPI GGNCC 3 cut(s) 152, 235, 626
PsrI GAACNNNNNNTAC 2 cut(s) 652, 684
PstNI CAGNNNCTG 1 cut(s) 441
PsuI RGATCY 2 cut(s) 77, 935
RsaI GTAC 1 cut(s) 900
RsaNI GTAC 1 cut(s) 899
RseI CAYNNNNRTG 1 cut(s) 1001
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 6 cut(s) 147, 408, 534, 1019, 1068, 1111
SatI GCNGC 4 cut(s) 165, 439, 442, 807
Sau3AI GATC 4 cut(s) 77, 935, 976, 1006
Sau96I GGNCC 3 cut(s) 152, 235, 626
ScrFI CCNGG 2 cut(s) 630, 1035
SduI GDGCHC 1 cut(s) 481
SfaNI GCATC 3 cut(s) 99, 441, 530
SinI GGWCC 2 cut(s) 235, 626
SmiMI CAYNNNNRTG 1 cut(s) 1001
SmlI CTYRAG 2 cut(s) 84, 388
SmoI CTYRAG 2 cut(s) 84, 388
SsiI CCGC 3 cut(s) 385, 438, 756
SspI AATATT 2 cut(s) 397, 532
SspMI CTAG 1 cut(s) 771
StyD4I CCNGG 2 cut(s) 628, 1033
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 2 cut(s) 572, 682
TaiI ACGT 1 cut(s) 1068
TatI WGTACW 1 cut(s) 898
TauI GCSGC 1 cut(s) 441
TfiI GAWTC 1 cut(s) 738
Tru1I TTAA 6 cut(s) 147, 408, 534, 1019, 1068, 1111
Tru9I TTAA 6 cut(s) 147, 408, 534, 1019, 1068, 1111
TscAI CASTG 5 cut(s) 505, 565, 687, 1061, 1102
TseFI GTSAC 3 cut(s) 563, 913, 971
TseI GCWGC 3 cut(s) 164, 441, 806
Tsp45I GTSAC 3 cut(s) 563, 913, 971
TspDTI ATGAA 6 cut(s) 17, 230, 350, 501, 582, 1014
TspGWI ACGGA 2 cut(s) 732, 911
TspRI CASTG 5 cut(s) 505, 565, 687, 1061, 1102
Van91I CCANNNNNTGG 1 cut(s) 635
VpaK11BI GGWCC 2 cut(s) 235, 626
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 2 cut(s) 175, 456
XmiI GTMKAC 1 cut(s) 839
XspI CTAG 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.