Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Forward (+)

19764806 .. 19766458

Gene Structure 1653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCAACGCTTTTACATTAATTGGACTTTCTTCACACGCGGAGTAAATAAAGGCATTGAGGAGGTGGAGGAGAAATATCGAATAATCTCATGGATTCATAACGCAGTAAGGTGTAATGTTGAAGAGCTTAACCTTAATTTCACTGCATGTGGTGGATTCACGTTTGTGTTGCCGTCTTGCCTATATCAGTCACAATCTTTCAAGTCTCTAGTATTAAAATGCTGGAATGAGATGACTCTTGAAGCACCACCAGTATCTCTGTCCTGCAATCTCCATTACCTGCAGTTGACTTCTGTTAGAATAGTAGATGAAAGGTTTTGCAAGTGGATCTCCTCTAGCTGCAAATGCATCAAGGAATTACATCTTATTCAAGTTAAAGGGATTAAAAATATGACCATTCAAAGCTCGTCATTGGAAATATTTAAGTCTGTTGGTATGGACCTGGTCGAGCTTAATATCTCCGGTCAGAAACTTATTTTTATTGACATAAACTGGAAATTTTGTTCTTCACCTGGGAACTGCTCATTAAATATTTGTGCTCCAAATCTGGAAGCTTTGACATGGGTGGGCAAGGTCTTGAATAGCCAAAATTTGGGGAAGTTACCTAATTTGCAAAGCACTCTCATTTTTCTTCAGCCTACGGTAGATCACAATTTGTCTGGGGTCTTTTCCAGTATATGCAGGACTAAAGTTCTTGGTCTAAATGAGAACACCATGAAGGCTATGTTCAAAGAATGTTCCATGCAAGCACCATTAGACATTCTTCGCCTGGTTATTGTACTTCCGAGCTTCAGTAATGACATAGTTCCAATAACGGCATCTGTTCTCAGAAGAACTGGTTATCTGAATAGCTTGGTGATAAGTACTTCTAAACCATTTAGATCGGACCCTAAATCTACATTGCAGTCTTCATCTGGATTTGATATGGGATACTGGAAATTGCAAAACCTCACTTTCATTTACCAGCTGAAGGATGTGAGCATAGACCTCTCCAGCGGGTCTAATGAAATTGAGTTTGCAAAGTACATTCTCGAGAATGCTCCGAATTTGAAGAAGATCGTGATCCGTCATCATCCGGGATCCCAACAATCAAATATCGTGGTAGGGAAGGTGACCAGATGCAAGATCATTTCGAGAGCCATTATTCTGATCCAGGAAATTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

388

Amino Acids

43.85

Weight (kDa)

9.06

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	26 - 382	1.4e-07	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	30 - 197	2.5e-08	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	334 - 355	8.6e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	288
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccII	CGCG	1 cut(s)	39
AciI	CCGC	2 cut(s)	39, 996
AclWI	GGATC	5 cut(s)	335, 1057, 1074, 1087, 1144
AcsI	RAATTY	4 cut(s)	497, 589, 1045, 1158
AcuI	CTGAAG	3 cut(s)	617, 775, 989
AfaI	GTAC	3 cut(s)	780, 865, 1025
AfiI	CCNNNNNNNGG	2 cut(s)	592, 970
AgsI	TTSAA	8 cut(s)	122, 202, 242, 371, 401, 580, 730, 1051
AjnI	CCWGG	4 cut(s)	441, 511, 768, 1152
AleI	CACNNNNGTG	1 cut(s)	164
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	8 cut(s)	127, 339, 405, 451, 554, 789, 852, 967
AluI	AGCT	8 cut(s)	127, 339, 405, 451, 554, 789, 852, 967
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	5 cut(s)	335, 1057, 1074, 1087, 1144
Ama87I	CYCGRG	1 cut(s)	1031
ApeKI	GCWGC	1 cut(s)	339
ApoI	RAATTY	4 cut(s)	497, 589, 1045, 1158
AseI	ATTAAT	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	439, 886
AsuC2I	CCSGG	1 cut(s)	1077
AsuHPI	GGTGA	3 cut(s)	501, 868, 1123
AvaI	CYCGRG	1 cut(s)	1031
AvaII	GGWCC	2 cut(s)	439, 886
BamHI	GGATCC	1 cut(s)	1079
BbsI	GAAGAC	1 cut(s)	900
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	326
BceAI	ACGGC	2 cut(s)	157, 831
BciT130I	CCWGG	4 cut(s)	443, 513, 770, 1154
BciVI	GTATCC	1 cut(s)	923
BcnI	CCSGG	1 cut(s)	1077
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	209, 336
BfmI	CTRYAG	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	923
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
BmcAI	AGTACT	1 cut(s)	865
Bme1390I	CCNGG	5 cut(s)	443, 513, 770, 1077, 1154
Bme18I	GGWCC	2 cut(s)	439, 886
BmeT110I	CYCGRG	1 cut(s)	1031
BmgT120I	GGNCC	2 cut(s)	439, 886
BmiI	GGNNCC	2 cut(s)	888, 1081
BmrFI	CCNGG	5 cut(s)	443, 513, 770, 1077, 1154
BmsI	GCATC	3 cut(s)	357, 827, 1109
BpiI	GAAGAC	1 cut(s)	900
BpmI	CTGGAG	1 cut(s)	976
BpuMI	CCSGG	1 cut(s)	1077
BsaBI	GATNNNNATC	1 cut(s)	1061
BsaJI	CCNNGG	1 cut(s)	512
BsaWI	WCCGGW	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 970
Bse1I	ACTGG	5 cut(s)	251, 497, 672, 841, 938
Bse3DI	GCAATG	1 cut(s)	899
Bse8I	GATNNNNATC	1 cut(s)	1061
BseBI	CCWGG	4 cut(s)	443, 513, 770, 1154
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	2 cut(s)	979, 1072
BseJI	GATNNNNATC	1 cut(s)	1061
BseLI	CCNNNNNNNGG	2 cut(s)	592, 970
BseMI	GCAATG	1 cut(s)	899
BseMII	CTCAG	1 cut(s)	841
BseNI	ACTGG	5 cut(s)	251, 497, 672, 841, 938
BseRI	GAGGAG	3 cut(s)	74, 83, 322
BseXI	GCAGC	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	1031
BsiSI	CCGG	2 cut(s)	462, 1076
BslI	CCNNNNNNNGG	2 cut(s)	592, 970
BsmAI	GTCTC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	1042
BsoBI	CYCGRG	1 cut(s)	1031
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	8 cut(s)	327, 646, 881, 1056, 1062, 1079, 1125, 1149
BspACI	CCGC	2 cut(s)	39, 996
BspCNI	CTCAG	1 cut(s)	840
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	888, 1081
BspMAI	CTGCAG	1 cut(s)	285
BspMI	ACCTGC	1 cut(s)	288
BspPI	GGATC	5 cut(s)	335, 1057, 1074, 1087, 1144
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	899
BsrI	ACTGG	5 cut(s)	251, 497, 672, 841, 938
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	8 cut(s)	327, 646, 881, 1056, 1062, 1079, 1125, 1149
Bst2UI	CCWGG	4 cut(s)	443, 513, 770, 1154
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	747
BstDEI	CTNAG	1 cut(s)	827
BstEII	GGTNACC	1 cut(s)	1111
BstF5I	GGATG	2 cut(s)	979, 1072
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	8 cut(s)	330, 649, 884, 1059, 1065, 1082, 1128, 1152
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	8 cut(s)	327, 646, 881, 1056, 1062, 1079, 1125, 1149
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	4 cut(s)	443, 513, 770, 1154
BstNSI	RCATGY	1 cut(s)	150
BstPI	GGTNACC	1 cut(s)	1111
BstSCI	CCNGG	5 cut(s)	441, 511, 768, 1075, 1152
BstSFI	CTRYAG	1 cut(s)	281
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	900
BstX2I	RGATCY	2 cut(s)	327, 1079
BstYI	RGATCY	2 cut(s)	327, 1079
BsuI	GTATCC	1 cut(s)	923
BtsCI	GGATG	2 cut(s)	979, 1072
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	747
Cfr13I	GGNCC	2 cut(s)	439, 886
CsiI	ACCWGGT	1 cut(s)	441
Csp6I	GTAC	3 cut(s)	779, 864, 1024
CspCI	CAANNNNNGTGG	2 cut(s)	1080, 1115
CviAII	CATG	5 cut(s)	90, 147, 561, 715, 742
CviQI	GTAC	3 cut(s)	779, 864, 1024
DdeI	CTNAG	1 cut(s)	827
DpnI	GATC	8 cut(s)	329, 648, 883, 1058, 1064, 1081, 1127, 1151
DpnII	GATC	8 cut(s)	327, 646, 881, 1056, 1062, 1079, 1125, 1149
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	439, 886
Eco57I	CTGAAG	3 cut(s)	617, 775, 989
Eco88I	CYCGRG	1 cut(s)	1031
Eco91I	GGTNACC	1 cut(s)	1111
EcoO65I	GGTNACC	1 cut(s)	1111
EcoRII	CCWGG	4 cut(s)	441, 511, 768, 1152
EcoT22I	ATGCAT	1 cut(s)	350
FaeI	CATG	5 cut(s)	93, 150, 564, 718, 745
FatI	CATG	5 cut(s)	89, 146, 560, 714, 741
FauI	CCCGC	1 cut(s)	989
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	2 cut(s)	986, 1059
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	2 cut(s)	209, 336
GluI	GCNGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	976
HapII	CCGG	2 cut(s)	462, 1076
Hin1II	CATG	5 cut(s)	93, 150, 564, 718, 745
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	3 cut(s)	94, 156, 235
HpaII	CCGG	2 cut(s)	462, 1076
HphI	GGTGA	3 cut(s)	501, 868, 1123
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	7 cut(s)	468, 786, 830, 846, 886, 1044, 1149
Hpy188III	TCNNGA	8 cut(s)	239, 548, 577, 915, 1031, 1033, 1060, 1134
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	3 cut(s)	712, 964, 1102
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4IV	ACGT	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	1 cut(s)	827
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	5 cut(s)	93, 150, 564, 718, 745
Kzo9I	GATC	8 cut(s)	327, 646, 881, 1056, 1062, 1079, 1125, 1149
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	544, 1045
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	3 cut(s)	357, 827, 1109
MabI	ACCWGGT	1 cut(s)	441
MaeI	CTAG	2 cut(s)	209, 336
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	3 cut(s)	189, 600, 1111
MalI	GATC	8 cut(s)	329, 648, 883, 1058, 1064, 1081, 1127, 1151
MboI	GATC	8 cut(s)	327, 646, 881, 1056, 1062, 1079, 1125, 1149
MboII	GAAGA	9 cut(s)	22, 134, 498, 623, 755, 843, 900, 1063, 1066
MflI	RGATCY	2 cut(s)	327, 1079
MhlI	GDGCHC	1 cut(s)	541
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	6 cut(s)	52, 55, 61, 343, 959, 998
Mph1103I	ATGCAT	1 cut(s)	350
MseI	TTAA	9 cut(s)	18, 129, 135, 215, 375, 384, 423, 453, 527
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	967, 996
MspI	CCGG	2 cut(s)	462, 1076
MspR9I	CCNGG	5 cut(s)	443, 513, 770, 1077, 1154
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	4 cut(s)	443, 513, 770, 1154
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	1077
NdeII	GATC	8 cut(s)	327, 646, 881, 1056, 1062, 1079, 1125, 1149
NlaIII	CATG	5 cut(s)	93, 150, 564, 718, 745
NlaIV	GGNNCC	2 cut(s)	888, 1081
NmuCI	GTSAC	2 cut(s)	189, 1111
NsiI	ATGCAT	1 cut(s)	350
NspI	RCATGY	1 cut(s)	150
OliI	CACNNNNGTG	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	1031
PciSI	GCTCTTC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	1042
PfeI	GAWTC	2 cut(s)	94, 156
PflFI	GACNNNGTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	592
PfoI	TCCNGGA	2 cut(s)	1075, 1152
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PshBI	ATTAAT	1 cut(s)	18
Psp6I	CCWGG	4 cut(s)	441, 511, 768, 1152
PspEI	GGTNACC	1 cut(s)	1111
PspGI	CCWGG	4 cut(s)	441, 511, 768, 1152
PspN4I	GGNNCC	2 cut(s)	888, 1081
PspPI	GGNCC	2 cut(s)	439, 886
PstI	CTGCAG	1 cut(s)	285
PsuI	RGATCY	2 cut(s)	327, 1079
PsyI	GACNNNGTC	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	967
RsaI	GTAC	3 cut(s)	780, 865, 1025
RsaNI	GTAC	3 cut(s)	779, 864, 1024
RseI	CAYNNNNRTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	9 cut(s)	18, 129, 135, 215, 375, 384, 423, 453, 527
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	8 cut(s)	327, 646, 881, 1056, 1062, 1079, 1125, 1149
Sau96I	GGNCC	2 cut(s)	439, 886
ScaI	AGTACT	1 cut(s)	865
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	5 cut(s)	443, 513, 770, 1077, 1154
SduI	GDGCHC	1 cut(s)	541
SexAI	ACCWGGT	1 cut(s)	441
SfaNI	GCATC	3 cut(s)	357, 827, 1109
SfcI	CTRYAG	1 cut(s)	281
Sfr274I	CTCGAG	1 cut(s)	1031
SinI	GGWCC	2 cut(s)	439, 886
SlaI	CTCGAG	1 cut(s)	1031
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	1031
SmoI	CTYRAG	1 cut(s)	1031
SsiI	CCGC	2 cut(s)	39, 996
SspI	AATATT	2 cut(s)	420, 532
SspMI	CTAG	2 cut(s)	209, 336
StyD4I	CCNGG	5 cut(s)	441, 511, 768, 1075, 1152
TaaI	ACNGT	1 cut(s)	643
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	4 cut(s)	79, 447, 1032, 1133
TatI	WGTACW	3 cut(s)	778, 863, 1023
TfiI	GAWTC	2 cut(s)	94, 156
Tru1I	TTAA	9 cut(s)	18, 129, 135, 215, 375, 384, 423, 453, 527
Tru9I	TTAA	9 cut(s)	18, 129, 135, 215, 375, 384, 423, 453, 527
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	189, 1111
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	2 cut(s)	189, 1111
TspDTI	ATGAA	6 cut(s)	86, 324, 731, 900, 946, 1020
TspGWI	ACGGA	1 cut(s)	1055
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	443
Van91I	CCANNNNNTGG	1 cut(s)	592
VpaK11BI	GGWCC	2 cut(s)	439, 886
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	4 cut(s)	497, 589, 1045, 1158
XceI	RCATGY	1 cut(s)	150
XhoI	CTCGAG	1 cut(s)	1031
XspI	CTAG	2 cut(s)	209, 336
ZrmI	AGTACT	1 cut(s)	865
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.