Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Reverse (-)

38085199 .. 38086293

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCGGTGGGCAGGCAAAGAAGCTCAAAGTTGTGGTACTCGAGCAGCTCAACCGACAGTGACACTAATGACACAAAGAAAGTTGGTGCTGAAGAAGATTTTGACGATTTTCTTAGGTGGCTTGAAAGATACGAAATGGAAGCCCGAGTAGTGGATCCAAAGAGGGGTTGGGGATTTCATGGTGTGCACAAGGTATTTTTACTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

69

Amino Acids

8.06

Weight (kDa)

6.06

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	149, 162
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	151, 164
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	2 cut(s)	24, 48
AluI	AGCT	2 cut(s)	24, 48
Alw21I	GWGCWC	1 cut(s)	189
Alw44I	GTGCAC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	149, 162
Ama87I	CYCGRG	2 cut(s)	40, 144
ApaLI	GTGCAC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	45
AvaI	CYCGRG	2 cut(s)	40, 144
BaeGI	GKGCMC	1 cut(s)	189
BamHI	GGATCC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
BmeT110I	CYCGRG	2 cut(s)	40, 144
BmiI	GGNNCC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 164
BseLI	CCNNNNNNNGG	2 cut(s)	151, 164
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	2 cut(s)	40, 144
BslI	CCNNNNNNNGG	2 cut(s)	151, 164
BsoBI	CYCGRG	2 cut(s)	40, 144
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	149, 162
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	2 cut(s)	113, 203
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	4 cut(s)	24, 48, 121, 143
CviKI_1	RGCY	4 cut(s)	24, 48, 121, 143
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	113, 203
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	2 cut(s)	40, 144
FaeI	CATG	1 cut(s)	182
FaiI	YATR	1 cut(s)	180
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	113, 203
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	154
Lsp1109I	GCAGC	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	104, 107
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	189
MnlI	CCTC	1 cut(s)	156
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	156
PspXI	VCTCGAGB	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	4 cut(s)	26, 50, 119, 195
Sfr274I	CTCGAG	1 cut(s)	40
SgeI	CNNG	8 cut(s)	25, 52, 54, 134, 156, 158, 191, 202
SlaI	CTCGAG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SsiI	CCGC	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.