RchiOBHm_Chr1g0349461

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001607
Physical Location & Seq
Forward (+)
42570455 .. 42571072
618 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 618 bp
ATGCGGAGGGTGGCTACAATATCATTCATTCACATTTTCAGTCCCATATCTGTATCTTTGATCTTTGTGATTTCCTGCACACCCCTTTGTCTTGTTCTCACCAACTCTCGTGTTTGTTTCGTAATGGCTTTGAGAAATACAATCCTGATTTTCTGTGTTGCAACGGCTTTTCTGAGCACTTGTTCTGGTGCAACTGCATCGGGGGCTGTATACAGAGCAGGGGTTGTTTACCATGTTGGTGACTCCAGTGGGTGGAGTATCTTTCCTGACTACAATAATTGGACTTCCACAAAAAACTTTCATGTGGGAGATACTTTACTTTTTACCTACGATAAGATGTTCCATAATTTGATGCAAGTCCATGGGAAAGATTACCAATCGTGCAACACTAAGTCGCCCATGGTCGTCTATGATACTGGATCTGATGCTATAAATCTTAAGAAACCTGGCGACTATTATTTCATCTGTGGTAGAAACTTCGAACCTGAGTGGTATGCTATGACTCTCAAGGAACCCGGCCACTGCCAAGCCGGGCAAAAACTTCACATCAAGGTCACTCTACCGATACCAAATCATCATATGGTTGCAAGTCCCATCCCAGCACCAGCACCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

205

Amino Acids

22.76

Weight (kDa)

8.77

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 87 - 158 6.6e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 252
AccI GTMKAC 1 cut(s) 210
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 427
AcoI YGGCCR 1 cut(s) 517
AfiI CCNNNNNNNGG 1 cut(s) 252
AflII CTTAAG 1 cut(s) 437
AjnI CCWGG 1 cut(s) 445
AleI CACNNNNGTG 1 cut(s) 613
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 1 cut(s) 427
AoxI GGCC 1 cut(s) 517
AsuC2I CCSGG 2 cut(s) 516, 532
AsuHPI GGTGA 2 cut(s) 91, 251
AsuII TTCGAA 1 cut(s) 480
BauI CACGAG 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 179
BccI CCATC 1 cut(s) 602
BceAI ACGGC 1 cut(s) 180
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BciT130I CCWGG 1 cut(s) 447
BcnI CCSGG 2 cut(s) 516, 532
BfrI CTTAAG 1 cut(s) 437
Bme1390I CCNGG 3 cut(s) 447, 516, 532
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 3 cut(s) 447, 516, 532
BmsI GCATC 3 cut(s) 206, 342, 415
BpmI CTGGAG 1 cut(s) 229
Bpu14I TTCGAA 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 2 cut(s) 516, 532
BsaJI CCNNGG 2 cut(s) 361, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse1I ACTGG 2 cut(s) 246, 421
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 2 cut(s) 361, 399
BseGI GGATG 1 cut(s) 594
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 164, 477
BseNI ACTGG 2 cut(s) 246, 421
BseYI CCCAGC 1 cut(s) 598
BsgI GTGCAG 1 cut(s) 61
BshFI GGCC 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 516, 531
BslFI GGGAC 2 cut(s) 27, 576
BslI CCNNNNNNNGG 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 27, 576
BsnI GGCC 1 cut(s) 519
Bsp119I TTCGAA 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 60, 419
Bsp19I CCATGG 2 cut(s) 361, 399
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 519
BspCNI CTCAG 2 cut(s) 165, 478
BspLI GGNNCC 1 cut(s) 513
BspPI GGATC 1 cut(s) 427
BspT104I TTCGAA 1 cut(s) 480
BspTI CTTAAG 1 cut(s) 437
BsrI ACTGG 2 cut(s) 246, 421
BssECI CCNNGG 2 cut(s) 361, 399
BssMI GATC 2 cut(s) 60, 419
BssNAI GTATAC 1 cut(s) 211
BssSI CACGAG 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 361, 399
Bst1107I GTATAC 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 447
BstAFI CTTAAG 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 173, 390, 486
BstDSI CCRYGG 2 cut(s) 361, 399
BstF5I GGATG 1 cut(s) 594
BstKTI GATC 2 cut(s) 63, 422
BstMBI GATC 2 cut(s) 60, 419
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 3 cut(s) 445, 514, 530
BstX2I RGATCY 1 cut(s) 419
BstYI RGATCY 1 cut(s) 419
BstZ17I GTATAC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 519
BtgI CCRYGG 2 cut(s) 361, 399
BtsCI GGATG 1 cut(s) 594
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 253, 520
CviAII CATG 4 cut(s) 233, 302, 362, 400
CviJI RGCY 6 cut(s) 14, 128, 167, 206, 519, 530
CviKI_1 RGCY 6 cut(s) 14, 128, 167, 206, 519, 530
DdeI CTNAG 3 cut(s) 173, 390, 486
DpnI GATC 2 cut(s) 62, 421
DpnII GATC 2 cut(s) 60, 419
EaeI YGGCCR 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 361, 399
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 2 cut(s) 361, 399
ErhI CCWWGG 2 cut(s) 361, 399
FaeI CATG 4 cut(s) 236, 305, 365, 403
FaqI GGGAC 2 cut(s) 27, 576
FatI CATG 4 cut(s) 232, 301, 361, 399
FauNDI CATATG 1 cut(s) 579
FblI GTMKAC 1 cut(s) 210
FokI GGATG 1 cut(s) 581
GsaI CCCAGC 1 cut(s) 602
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 1 cut(s) 519
HapII CCGG 2 cut(s) 516, 531
Hin1II CATG 4 cut(s) 236, 305, 365, 403
HinfI GANTC 2 cut(s) 242, 502
HpaII CCGG 2 cut(s) 516, 531
HphI GGTGA 2 cut(s) 91, 251
Hpy166II GTNNAC 2 cut(s) 211, 229
Hpy188I TCNGA 2 cut(s) 174, 424
Hpy188III TCNNGA 2 cut(s) 145, 266
Hpy8I GTNNAC 2 cut(s) 211, 229
HpyCH4V TGCA 7 cut(s) 78, 161, 191, 197, 355, 384, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 3 cut(s) 173, 390, 486
Hsp92II CATG 4 cut(s) 236, 305, 365, 403
Kzo9I GATC 2 cut(s) 60, 419
LweI GCATC 3 cut(s) 206, 342, 415
MaeIII GTNAC 2 cut(s) 239, 553
MalI GATC 2 cut(s) 62, 421
MboI GATC 2 cut(s) 60, 419
MflI RGATCY 1 cut(s) 419
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 2 cut(s) 277, 346
MlyI GAGTC 2 cut(s) 236, 496
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 2 cut(s) 237, 613
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 2 cut(s) 516, 531
MspR9I CCNGG 3 cut(s) 447, 516, 532
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 2 cut(s) 516, 532
NcoI CCATGG 2 cut(s) 361, 399
NdeI CATATG 1 cut(s) 579
NdeII GATC 2 cut(s) 60, 419
NlaIII CATG 4 cut(s) 236, 305, 365, 403
NlaIV GGNNCC 1 cut(s) 513
NmuCI GTSAC 2 cut(s) 239, 553
NspV TTCGAA 1 cut(s) 480
OliI CACNNNNGTG 1 cut(s) 613
PflMI CCANNNNNTGG 1 cut(s) 252
PleI GAGTC 2 cut(s) 236, 496
PpsI GAGTC 2 cut(s) 236, 496
Psp6I CCWGG 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 513
PsuI RGATCY 1 cut(s) 419
RseI CAYNNNNRTG 2 cut(s) 237, 613
SaqAI TTAA 1 cut(s) 438
Sau3AI GATC 2 cut(s) 60, 419
SchI GAGTC 2 cut(s) 236, 496
ScrFI CCNGG 3 cut(s) 447, 516, 532
SduI GDGCHC 1 cut(s) 179
SetI ASST 4 cut(s) 329, 448, 487, 555
SfaNI GCATC 3 cut(s) 206, 342, 415
SfuI TTCGAA 1 cut(s) 480
SmiMI CAYNNNNRTG 2 cut(s) 237, 613
SmlI CTYRAG 2 cut(s) 437, 506
SmoI CTYRAG 2 cut(s) 437, 506
Sse9I AATT 2 cut(s) 277, 346
SsiI CCGC 1 cut(s) 4
StyD4I CCNGG 3 cut(s) 445, 514, 530
StyI CCWWGG 2 cut(s) 361, 399
TaqI TCGA 1 cut(s) 480
TasI AATT 2 cut(s) 277, 346
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 2 cut(s) 253, 527
TseFI GTSAC 2 cut(s) 239, 553
Tsp45I GTSAC 2 cut(s) 239, 553
TspDTI ATGAA 3 cut(s) 16, 290, 451
TspRI CASTG 2 cut(s) 253, 527
Van91I CCANNNNNTGG 1 cut(s) 252
Vha464I CTTAAG 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.