Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001977

Physical Location & Seq

Genomic Coordinates Forward (+)

59009729 .. 59011305

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTAAGTTCACCGTTTCCAGCTGCAGTTTCCCCTTCATTTTGCTCCTCTTCCCCTTCTACTCCCTAACCCTAACCCTAATTGCAAAACCCATTTCTTCTTCTTCGCTCCAAGCCCTTAACACCACCATCCCCCAAAATTTCGATTCCGAAATTGCCCTCTTCGGCGACGCCGCGGACGGCGGCTCTTACGTGAACCTCACGGGCGGATCGGCCTCAAGCTCCGGTCTTCTCCTCCGCCGAAAGCCCTTTAAAGTCGCGGACGCGAATCTCAGCAATCCGGCGTCTTTTTCGTCCGAATTGATCTTCTCGATCACGCCCGGCAACGGCGATGGTATTGTGGTCGTTTTTGTTCCCGGCGATTTGGGCTCGAGGTTCTCCGGTAAGGGCCCGTTTGGGCTTGGCGGTGAGAATCGATTTCTGGGTATTGAATTTGATACTGAAATGAATGAAAATGTGAATGATGTTAATGCGAATCATATAGGGGTGAATGTGGGTAGCTTTGTATCTCTGACTGTTGGGAATGTTACTGCATTGAATTTGGTGCTTAATAGTGGACAAAAGATGAAATCTTGGATTGATTATGATGCTAGTTCGAAAAGATTAGAGATAAGGTTGAGTAAGTTGGGTGAACCAAGGCCTTATAATCCGATTGTTGCGCATGGCATAGATTTGTTGGCAATGTGGAAAGATAAGGATGTGTATGTAGGGATAAGCTCGTCGAATTCAAATGGCAGTTCCTCGCAGATTAGTAGTGTGTATTCTTGGAGTTTTAGGATGAGAAAGGTTCCGAGGATGCATTCGCATCCGGTGAATCCGAGGGGTTATTTGGATGATCAGCATGGTGGAAATCCGGGTCTGGATAACAGGATGGCTTGTCCATTGTCAATTCTTGCTGGGATTATATTCATGACTGGGTGTGGAGCTCTGGTTTCATTTGTCATGCTGTTTTTGTGGGCTATAATTGTTAACAGGCACACGGTTTTCCCTGCTGAAGTGCTCCCAGATGAGTTTCCGGTGAAGCCTAATCCTACGGATTTCAGGTATGAGAAGATCAGTGTAGTTGTAGAGGAAGATGCAGATGCAGATGGTGTTAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

367

Amino Acids

39.64

Weight (kDa)

5.89

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	47 - 265	4.1e-40	Legume lectin domain
Lectin_L-type_dom	PF18483	47 - 243	6.8e-07	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09035 AT3G09190 AT5G01090
fragaria_vesca	FvH4_6g12300 FvH4_7g23770
malus_domestica	MD01G1145100.v1.1 MD07G1165700.v1.1 MD07G1211800.v1.1 MD12G1085400.v1.1
prunus_persica	Prupe.2G244400_v2.0.a1 Prupe.6G268200_v2.0.a1
pyrus_communis	pycom01g16450 pycom04g13040 pycom04g13050 pycom07g19500 pycom12g08030 pycom12g15000
rosa_chinensis	RchiOBHm_Chr1g0369101 RchiOBHm_Chr3g0464131
rosa_laevigata	RLG00000024720 RLG00000027158
rosa_multiflora	Rmu_sc0001552.1_g000037 Rmu_sc0003337.1_g000012 Rmu_sc0004250.1_g000019 Rmu_sc0010401.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288000 Rroxscaffold_6G00415970
rosa_rugosa	Rorug01G0348100 Rorug03G0070700
rosa_samantha	Rh1AG354900 Rh1BG318200 Rh1BG335600 Rh1CG332600 Rh1DG348900 Rh2BG629000 Rh2CG320200 Rh2DG640800 Rh3BG132100 Rh3CG134300 Rh3DG133300 Rh4DG353800 Rh6BG239800 Rh7DG015800
rosa_wichuraiana	Rw1G031320 Rw3G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
Acc16I	TGCGCA	1 cut(s)	660
AccII	CGCG	3 cut(s)	176, 260, 266
AciI	CCGC	7 cut(s)	174, 176, 183, 207, 238, 260, 405
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	4 cut(s)	139, 431, 538, 724
AcuI	CTGAAG	1 cut(s)	1014
AcyI	GRCGYC	2 cut(s)	171, 284
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	431, 538, 729
AluBI	AGCT	5 cut(s)	24, 222, 501, 717, 926
AluI	AGCT	5 cut(s)	24, 222, 501, 717, 926
Alw21I	GWGCWC	2 cut(s)	928, 1002
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	3 cut(s)	213, 388, 638
ApaI	GGGCCC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	4 cut(s)	139, 431, 538, 724
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	2 cut(s)	388, 389
AsuC2I	CCSGG	3 cut(s)	321, 357, 855
AsuHPI	GGTGA	6 cut(s)	4, 419, 499, 641, 823, 1030
AsuII	TTCGAA	1 cut(s)	596
AvaI	CYCGRG	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	392
BanII	GRGCYC	3 cut(s)	371, 392, 928
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	928, 1002
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	4 cut(s)	137, 326, 865, 1082
BceAI	ACGGC	2 cut(s)	196, 343
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	3 cut(s)	321, 357, 855
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	25
BisI	GCNGC	3 cut(s)	25, 174, 184
BlsI	GCNGC	3 cut(s)	26, 175, 185
Bme1390I	CCNGG	3 cut(s)	321, 357, 855
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	388, 389
BmiI	GGNNCC	2 cut(s)	390, 789
BmrFI	CCNGG	3 cut(s)	321, 357, 855
BmrI	ACTGGG	1 cut(s)	924
BmsI	GCATC	5 cut(s)	577, 786, 814, 1066, 1072
BmuI	ACTGGG	1 cut(s)	924
BpiI	GAAGAC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	596
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	3 cut(s)	321, 357, 855
Bsa29I	ATCGAT	1 cut(s)	415
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	2 cut(s)	171, 284
BsaJI	CCNNGG	4 cut(s)	174, 635, 791, 818
BsaWI	WCCGGW	4 cut(s)	224, 380, 808, 1015
BsaXI	ACNNNNNCTCC	2 cut(s)	915, 945
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	919
Bse3DI	GCAATG	1 cut(s)	687
BseCI	ATCGAT	1 cut(s)	415
BseDI	CCNNGG	4 cut(s)	174, 635, 791, 818
BseGI	GGATG	7 cut(s)	129, 703, 783, 801, 805, 838, 876
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	919
BseRI	GAGGAG	2 cut(s)	38, 224
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	896
Bsh1236I	CGCG	3 cut(s)	176, 260, 266
BshFI	GGCC	3 cut(s)	215, 390, 640
BshVI	ATCGAT	1 cut(s)	415
BsiHKAI	GWGCWC	2 cut(s)	928, 1002
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	8 cut(s)	225, 281, 321, 357, 381, 809, 854, 1016
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	3 cut(s)	215, 390, 640
BsoBI	CYCGRG	1 cut(s)	370
Bsp119I	TTCGAA	1 cut(s)	596
Bsp120I	GGGCCC	1 cut(s)	388
Bsp1286I	GDGCHC	4 cut(s)	371, 392, 928, 1002
Bsp143I	GATC	5 cut(s)	209, 303, 312, 835, 1053
BspACI	CCGC	7 cut(s)	174, 176, 183, 207, 238, 260, 405
BspANI	GGCC	3 cut(s)	215, 390, 640
BspCNI	CTCAG	1 cut(s)	285
BspDI	ATCGAT	1 cut(s)	415
BspFNI	CGCG	3 cut(s)	176, 260, 266
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	2 cut(s)	390, 789
BspMAI	CTGCAG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	217
BspT104I	TTCGAA	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	919
BssECI	CCNNGG	4 cut(s)	174, 635, 791, 818
BssMI	GATC	5 cut(s)	209, 303, 312, 835, 1053
BssNI	GRCGYC	2 cut(s)	171, 284
BssT1I	CCWWGG	1 cut(s)	635
Bst4CI	ACNGT	3 cut(s)	16, 517, 982
Bst6I	CTCTTC	2 cut(s)	56, 167
BstACI	GRCGYC	2 cut(s)	171, 284
BstBAI	YACGTR	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	596
BstDEI	CTNAG	2 cut(s)	6, 272
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	7 cut(s)	129, 703, 783, 801, 805, 838, 876
BstFNI	CGCG	3 cut(s)	176, 260, 266
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	5 cut(s)	212, 306, 315, 838, 1056
BstMBI	GATC	5 cut(s)	209, 303, 312, 835, 1053
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstSCI	CCNGG	3 cut(s)	319, 355, 853
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	3 cut(s)	176, 260, 266
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	215, 390, 640
BsuTUI	ATCGAT	1 cut(s)	415
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	7 cut(s)	129, 703, 783, 801, 805, 838, 876
BtsIMutI	CAGTG	1 cut(s)	1063
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	1 cut(s)	661
Cfr13I	GGNCC	2 cut(s)	388, 389
Cfr42I	CCGCGG	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	415
CseI	GACGC	3 cut(s)	179, 272, 273
CviAII	CATG	4 cut(s)	662, 842, 910, 943
DdeI	CTNAG	2 cut(s)	6, 272
DpnI	GATC	5 cut(s)	211, 305, 314, 837, 1055
DpnII	GATC	5 cut(s)	209, 303, 312, 835, 1053
DraI	TTTAAA	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	56, 167
EarI	CTCTTC	2 cut(s)	56, 167
EciI	GGCGGA	2 cut(s)	222, 227
Ecl136II	GAGCTC	1 cut(s)	926
Eco130I	CCWWGG	1 cut(s)	635
Eco147I	AGGCCT	1 cut(s)	640
Eco24I	GRGCYC	3 cut(s)	371, 392, 928
Eco53kI	GAGCTC	1 cut(s)	926
Eco57I	CTGAAG	1 cut(s)	1014
Eco88I	CYCGRG	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	926
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	635
EcoT22I	ATGCAT	1 cut(s)	801
EcoT38I	GRGCYC	3 cut(s)	371, 392, 928
ErhI	CCWWGG	1 cut(s)	635
FaeI	CATG	4 cut(s)	665, 845, 913, 946
FatI	CATG	4 cut(s)	661, 841, 909, 942
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	3 cut(s)	25, 174, 184
FokI	GGATG	7 cut(s)	116, 710, 790, 792, 808, 845, 883
FriOI	GRGCYC	3 cut(s)	371, 392, 928
Fsp4HI	GCNGC	3 cut(s)	25, 174, 184
FspBI	CTAG	1 cut(s)	591
FspI	TGCGCA	1 cut(s)	660
GlaI	GCGC	1 cut(s)	660
GluI	GCNGC	3 cut(s)	25, 174, 184
GsaI	CCCAGC	1 cut(s)	900
HaeIII	GGCC	3 cut(s)	215, 390, 640
HapII	CCGG	8 cut(s)	225, 281, 321, 357, 381, 809, 854, 1016
HgaI	GACGC	3 cut(s)	179, 272, 273
HhaI	GCGC	1 cut(s)	661
Hin1I	GRCGYC	2 cut(s)	171, 284
Hin1II	CATG	4 cut(s)	665, 845, 913, 946
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HinfI	GANTC	5 cut(s)	146, 268, 412, 475, 814
HpaI	GTTAAC	1 cut(s)	970
HpaII	CCGG	8 cut(s)	225, 281, 321, 357, 381, 809, 854, 1016
HphI	GGTGA	6 cut(s)	4, 419, 499, 641, 823, 1030
Hpy166II	GTNNAC	5 cut(s)	12, 196, 557, 632, 970
Hpy188I	TCNGA	6 cut(s)	151, 298, 513, 651, 792, 819
Hpy188III	TCNNGA	3 cut(s)	310, 860, 910
Hpy8I	GTNNAC	5 cut(s)	12, 196, 557, 632, 970
Hpy99I	CGWCG	2 cut(s)	173, 724
HpyAV	CCTTC	2 cut(s)	46, 67
HpyCH4III	ACNGT	3 cut(s)	16, 517, 982
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	6 cut(s)	27, 86, 533, 799, 1079, 1085
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	2 cut(s)	6, 272
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	171, 284
Hsp92II	CATG	4 cut(s)	665, 845, 913, 946
HspAI	GCGC	1 cut(s)	659
Ksp22I	TGATCA	1 cut(s)	835
KspAI	GTTAAC	1 cut(s)	970
KspI	CCGCGG	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	209, 303, 312, 835, 1053
LmnI	GCTCC	5 cut(s)	51, 114, 227, 923, 1005
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	5 cut(s)	577, 786, 814, 1066, 1072
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	5 cut(s)	211, 305, 314, 837, 1055
MboI	GATC	5 cut(s)	209, 303, 312, 835, 1053
MboII	GAAGA	9 cut(s)	43, 90, 93, 96, 154, 221, 298, 1063, 1085
MhlI	GDGCHC	4 cut(s)	371, 392, 928, 1002
MluCI	AATT	9 cut(s)	81, 139, 153, 299, 431, 538, 724, 888, 963
Mph1103I	ATGCAT	1 cut(s)	801
MseI	TTAA	6 cut(s)	120, 252, 468, 549, 969, 1095
MspA1I	CMGCKG	2 cut(s)	24, 176
MspI	CCGG	8 cut(s)	225, 281, 321, 357, 381, 809, 854, 1016
MspR9I	CCNGG	3 cut(s)	321, 357, 855
Mva1269I	GAATGC	1 cut(s)	799
MvnI	CGCG	3 cut(s)	176, 260, 266
MwoI	GCNNNNNNNGC	1 cut(s)	366
NciI	CCSGG	3 cut(s)	321, 357, 855
NdeII	GATC	5 cut(s)	209, 303, 312, 835, 1053
NlaIII	CATG	4 cut(s)	665, 845, 913, 946
NlaIV	GGNNCC	2 cut(s)	390, 789
NsbI	TGCGCA	1 cut(s)	660
NsiI	ATGCAT	1 cut(s)	801
NspV	TTCGAA	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	370
PagI	TCATGA	1 cut(s)	909
PceI	AGGCCT	1 cut(s)	640
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	5 cut(s)	146, 268, 412, 475, 814
PkrI	GCNGC	3 cut(s)	26, 175, 185
Ppu21I	YACGTR	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	928
PspFI	CCCAGC	1 cut(s)	896
PspN4I	GGNNCC	2 cut(s)	390, 789
PspOMI	GGGCCC	1 cut(s)	388
PspPI	GGNCC	2 cut(s)	388, 389
PspXI	VCTCGAGB	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	928
SacII	CCGCGG	1 cut(s)	177
SaqAI	TTAA	6 cut(s)	120, 252, 468, 549, 969, 1095
SatI	GCNGC	3 cut(s)	25, 174, 184
Sau3AI	GATC	5 cut(s)	209, 303, 312, 835, 1053
Sau96I	GGNCC	2 cut(s)	388, 389
ScrFI	CCNGG	3 cut(s)	321, 357, 855
SduI	GDGCHC	4 cut(s)	371, 392, 928, 1002
SfaNI	GCATC	5 cut(s)	577, 786, 814, 1066, 1072
SfcI	CTRYAG	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	370
Sfr303I	CCGCGG	1 cut(s)	177
SfuI	TTCGAA	1 cut(s)	596
SgrBI	CCGCGG	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	370
SmlI	CTYRAG	2 cut(s)	217, 370
SmoI	CTYRAG	2 cut(s)	217, 370
Sse9I	AATT	9 cut(s)	81, 139, 153, 299, 431, 538, 724, 888, 963
SseBI	AGGCCT	1 cut(s)	640
SsiI	CCGC	7 cut(s)	174, 176, 183, 207, 238, 260, 405
SspMI	CTAG	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	928
StuI	AGGCCT	1 cut(s)	640
StyD4I	CCNGG	3 cut(s)	319, 355, 853
StyI	CCWWGG	1 cut(s)	635
TaaI	ACNGT	3 cut(s)	16, 517, 982
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	6 cut(s)	144, 311, 371, 415, 596, 722
TasI	AATT	9 cut(s)	81, 139, 153, 299, 431, 538, 724, 888, 963
TauI	GCSGC	2 cut(s)	176, 186
TfiI	GAWTC	5 cut(s)	146, 268, 412, 475, 814
Tru1I	TTAA	6 cut(s)	120, 252, 468, 549, 969, 1095
Tru9I	TTAA	6 cut(s)	120, 252, 468, 549, 969, 1095
TscAI	CASTG	1 cut(s)	1063
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	6 cut(s)	28, 461, 465, 581, 898, 924
TspGWI	ACGGA	1 cut(s)	1049
TspRI	CASTG	1 cut(s)	1063
XapI	RAATTY	4 cut(s)	139, 431, 538, 724
XhoI	CTCGAG	1 cut(s)	370
XspI	CTAG	1 cut(s)	591
Zsp2I	ATGCAT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.