Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Forward (+)

59421404 .. 59422754

Gene Structure 1351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTGCCATGTTGGCAATCTGTGTGACCTTCCTCTAAACCAATCAGCAAACAACATCAGGTCCTATATATTAGAACCCCACTGCTCTACTAATTCCATCACAGAGCAACTCCCAACCCACACTCTCTCTCAAATCAAGTCTGTGTCCAGGTCAAGCAAAGCTGGACTTCAATTTCCTGTGGGTAGGATCGCCCGGTTTCTTAAGTCCGATAAGAACACCAAGGCTCCGAGCGTGTCGGTATTGGAGCTCCGTTGTATCTTTCGACTGTCCTTGAATACCTGGCTACTGAGGGTTTCGGGAATTGGGGATCTGGATTTTAGGGATTTTGTATTTCTAAAGACTGGAAATTTGATTTTGGGTTTAAGGTTTGTTGAAGGGTGGAATGTTGTTCATTTGGTTTTGTTAGCTTTATACTCTGATAGGGACAACAAGAAGAACCGTATTGTACCGAGGTGTACAATCTCAAATCAGCTATGGTTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

161

Amino Acids

18.25

Weight (kDa)

9.76

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	194, 315
AcsI	RAATTY	1 cut(s)	346
AfaI	GTAC	2 cut(s)	447, 457
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	170, 274, 374
AjnI	CCWGG	2 cut(s)	146, 278
AluBI	AGCT	4 cut(s)	161, 247, 407, 472
AluI	AGCT	4 cut(s)	161, 247, 407, 472
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	194, 315
ApoI	RAATTY	1 cut(s)	346
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AspS9I	GGNCC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	148, 280
BcnI	CCSGG	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	482
BfrI	CTTAAG	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	12
Bme1390I	CCNGG	3 cut(s)	148, 193, 280
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	3 cut(s)	148, 193, 280
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	219, 449
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bse1I	ACTGG	1 cut(s)	346
BseBI	CCWGG	2 cut(s)	148, 280
BseDI	CCNNGG	2 cut(s)	219, 449
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	2 cut(s)	186, 307
BspCNI	CTCAG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	194, 315
BspTI	CTTAAG	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	219, 449
BssMI	GATC	2 cut(s)	186, 307
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	148, 280
Bst4CI	ACNGT	2 cut(s)	267, 440
BstAFI	CTTAAG	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	287
BstKTI	GATC	2 cut(s)	189, 310
BstMBI	GATC	2 cut(s)	186, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	2 cut(s)	148, 280
BstSCI	CCNGG	3 cut(s)	146, 191, 278
BstSFI	CTRYAG	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	446, 456
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	6 cut(s)	161, 224, 247, 283, 407, 472
CviKI_1	RGCY	6 cut(s)	161, 224, 247, 283, 407, 472
CviQI	GTAC	2 cut(s)	446, 456
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	2 cut(s)	188, 309
DpnII	GATC	2 cut(s)	186, 307
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	146, 278
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	11
FaiI	YATR	5 cut(s)	9, 66, 68, 412, 475
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	249
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	1 cut(s)	11
HpaII	CCGG	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	3 cut(s)	208, 228, 418
Hpy188III	TCNNGA	2 cut(s)	297, 311
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	2 cut(s)	38, 368
HpyCH4III	ACNGT	2 cut(s)	267, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	186, 307
LmnI	GCTCC	3 cut(s)	229, 244, 252
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	188, 309
MboI	GATC	2 cut(s)	186, 307
MboII	GAAGA	1 cut(s)	445
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	91, 170, 300, 346
MnlI	CCTC	3 cut(s)	42, 282, 444
MseI	TTAA	2 cut(s)	201, 362
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	3 cut(s)	148, 193, 280
MvaI	CCWGG	2 cut(s)	148, 280
MwoI	GCNNNNNNNGC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	2 cut(s)	186, 307
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	146, 278
PspGI	CCWGG	2 cut(s)	146, 278
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	60
PspPPI	RGGWCCY	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	447, 457
RsaNI	GTAC	2 cut(s)	446, 456
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	201, 362
Sau3AI	GATC	2 cut(s)	186, 307
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	3 cut(s)	148, 193, 280
SduI	GDGCHC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	482
SinI	GGWCC	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	4 cut(s)	91, 170, 300, 346
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	3 cut(s)	146, 191, 278
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	267, 440
TaqI	TCGA	1 cut(s)	262
TasI	AATT	4 cut(s)	91, 170, 300, 346
TatI	WGTACW	1 cut(s)	455
Tru1I	TTAA	2 cut(s)	201, 362
Tru9I	TTAA	2 cut(s)	201, 362
TscAI	CASTG	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	380
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	86
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.