Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Forward (+)

66289626 .. 66290076

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGAGGACCATGTTATTGTTCCAAACATGAATTCAGATATGGAGGATGCAGACCAGTTTGTTAGAGACTACATTTCGCGCCTTACTACAACCCCTCTTGACCTTTCCAAGCTACTGTGGGAATCCTCAATGTCAACAAAACCTCTGATGCAGAAGCTGTTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

55

Amino Acids

6.41

Weight (kDa)

4.51

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
AluBI	AGCT	2 cut(s)	112, 157
AluI	AGCT	2 cut(s)	112, 157
Alw26I	GTCTC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmsI	GCATC	2 cut(s)	37, 138
Bse1I	ACTGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	60
BstUI	CGCG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	7
CviAII	CATG	2 cut(s)	11, 28
CviJI	RGCY	2 cut(s)	112, 157
CviKI_1	RGCY	2 cut(s)	112, 157
Eco47I	GGWCC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	31
FaeI	CATG	2 cut(s)	14, 31
FaiI	YATR	3 cut(s)	12, 29, 41
FatI	CATG	2 cut(s)	10, 27
FokI	GGATG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	14, 31
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	2 cut(s)	37, 147
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	50, 151, 163
Hsp92II	CATG	2 cut(s)	14, 31
HspAI	GCGC	1 cut(s)	79
LpnPI	CCDG	1 cut(s)	68
LweI	GCATC	2 cut(s)	37, 138
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	4 cut(s)	37, 105, 136, 153
MvnI	CGCG	1 cut(s)	79
NlaIII	CATG	2 cut(s)	14, 31
PfeI	GAWTC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	7
SetI	ASST	4 cut(s)	105, 114, 145, 159
SfaNI	GCATC	2 cut(s)	37, 138
SgeI	CNNG	6 cut(s)	23, 40, 67, 90, 110, 121
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	117
TasI	AATT	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.