Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Reverse (-)

3011254 .. 3011688

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54640

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTGGCTGGGGATTTTGGGAACATCACAAGCCACATCCCGCAGATTCAAAGAGAATCCAAATTCTACTCTTTTCCTAGAATTTGAGCGATGGATGGCAGCCTTCGACAAACATTACCCGAACGACGAAGAGAAGGAGAGGCGTTTCGCAATCTTCAAGAACAAGTTGGAGTGGGTCAAGAACTTCAACAAGCAAGGGAATCACTCTTTTACGGTAGGAATCAATCAATTTTCTGATATGACCCCTGATGAATTCCGGCTATGTGCTACTGGCCGCCGCCGCAGCCGCCGCCGCCGCCACCCCAGATTAAGCTCTAGTGTGGTCGACTCCTCCAGGTGGCTGATCTGGGTTCTGCCTTTATTTGGCATTATAGCCGTGTTGATGTGTGGTACGGCTATGGAGCAGGGTTGGTTTGCTTGGAAGTCCGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

144

Amino Acids

17.07

Weight (kDa)

10.09

Isoelectric Point (pI)

68.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	28 - 85	9e-21	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	8 cut(s)	40, 274, 277, 280, 286, 289, 292, 295
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	3 cut(s)	61, 80, 251
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	2 cut(s)	336, 362
AgsI	TTSAA	3 cut(s)	49, 157, 187
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	98, 282
ApoI	RAATTY	3 cut(s)	61, 80, 251
BbvI	GCAGC	2 cut(s)	110, 294
BccI	CCATC	2 cut(s)	84, 88
BceAI	ACGGC	2 cut(s)	359, 408
BciT130I	CCWGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	2 cut(s)	77, 315
BisI	GCNGC	9 cut(s)	99, 274, 277, 280, 283, 286, 289, 292, 295
BlsI	GCNGC	9 cut(s)	100, 275, 278, 281, 284, 287, 290, 293, 296
Bme1390I	CCNGG	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 362
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	35, 99
BseLI	CCNNNNNNNGG	2 cut(s)	336, 362
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	319
BseXI	GCAGC	2 cut(s)	110, 294
BseYI	CCCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	336, 362
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	342
BspACI	CCGC	8 cut(s)	40, 274, 277, 280, 286, 289, 292, 295
BspANI	GGCC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	274
BssMI	GATC	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	35, 99
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	6 cut(s)	279, 282, 285, 288, 291, 294
BstNI	CCWGG	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	110, 294
BsuRI	GGCC	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	35, 99
Csp6I	GTAC	1 cut(s)	390
CviQI	GTAC	1 cut(s)	390
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	332
FaiI	YATR	4 cut(s)	239, 262, 371, 398
FauI	CCCGC	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	9 cut(s)	99, 274, 277, 280, 283, 286, 289, 292, 295
FokI	GGATG	2 cut(s)	22, 106
Fsp4HI	GCNGC	9 cut(s)	99, 274, 277, 280, 283, 286, 289, 292, 295
FspBI	CTAG	2 cut(s)	77, 315
GluI	GCNGC	9 cut(s)	99, 274, 277, 280, 283, 286, 289, 292, 295
GsaI	CCCAGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	5 cut(s)	45, 55, 199, 219, 326
HpaII	CCGG	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	235, 427
Hpy188III	TCNNGA	2 cut(s)	157, 178
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	112, 127
HpyCH4III	ACNGT	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	6 cut(s)	279, 282, 285, 288, 291, 294
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	8 cut(s)	255, 258, 269, 316, 319, 331, 346, 389
Lsp1109I	GCAGC	2 cut(s)	110, 294
MaeI	CTAG	2 cut(s)	77, 315
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	2 cut(s)	140, 145
MluCI	AATT	4 cut(s)	61, 80, 227, 251
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	2 cut(s)	132, 340
MseI	TTAA	1 cut(s)	308
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	6 cut(s)	279, 282, 285, 288, 291, 294
NdeII	GATC	1 cut(s)	342
PfeI	GAWTC	4 cut(s)	45, 55, 199, 219
PkrI	GCNGC	9 cut(s)	100, 275, 278, 281, 284, 287, 290, 293, 296
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	9 cut(s)	99, 274, 277, 280, 283, 286, 289, 292, 295
Sau3AI	GATC	1 cut(s)	342
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	334
SetI	ASST	2 cut(s)	314, 338
Sse9I	AATT	4 cut(s)	61, 80, 227, 251
SsiI	CCGC	8 cut(s)	40, 274, 277, 280, 286, 289, 292, 295
SspMI	CTAG	2 cut(s)	77, 315
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	105, 324
TasI	AATT	4 cut(s)	61, 80, 227, 251
TauI	GCSGC	7 cut(s)	276, 279, 282, 288, 291, 294, 297
TfiI	GAWTC	4 cut(s)	45, 55, 199, 219
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TseI	GCWGC	2 cut(s)	98, 282
TspDTI	ATGAA	1 cut(s)	264
XapI	RAATTY	3 cut(s)	61, 80, 251
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	2 cut(s)	77, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.