Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Reverse (-)

26852591 .. 26853660

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG285900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGTTTTCATCGAAGAAACCTCTTCATTCCCGTTCTGTTCATCATATTGCTGATCGGAACCTCGGCAATTTCTCAAGTGGCCGCATCCGACGATCAAGCGGATCCGTTCAACGCTTCTCGAGTCTTCGAGGAATGGATGGTGAAGCACAAGCGCGTCTACAAGAGCAAGGAAGAGAAAGAAAAGCGTTTTGCCATATTCAAAACCGCGTTCAAGGGTCGGAAGAGGAGCCTTCACAAGTTTTCTGATATGACCCCGGACGAAATCCCCATGGATTGCCGCCATAACCCTGATCTTCTTAAAATGCCCCCTGTTGTCAGATATGACGATCAAGAGGATCCGTTCAACGCTTCTCAAGTCTTCGAGGAATGGATGATGATGAAGTACAAGCGCGTCTACAAGAGCATGGAAGAGAAAGAAAAGCGTTTTGCCATATTCAAAACCGCGTTCAAGGGTTTGAAGAGGAAGCACGACTGGCGGGAATACAAATCGCTTATTGCACACCTTAACATCTTTGCTGATATGACCATGGACGAAATCCCCATGGGTTGCCATAACCCTGAAGATTTGAGGCCCCCTGTACATGACCTTCGCCGAAATCCCCATGGGTTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04380 ko04612 ko04620 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04380 map04612 map04620 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

205

Amino Acids

24.42

Weight (kDa)

9.33

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	43 - 71	1.4e-06	Cathepsin propeptide inhibitor domain (I29)
Inhibitor_I29	PF08246	121 - 180	3.6e-07	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	159, 396
AccII	CGCG	4 cut(s)	156, 209, 393, 446
AciI	CCGC	6 cut(s)	84, 101, 207, 280, 444, 478
AclWI	GGATC	4 cut(s)	98, 111, 332, 345
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	386, 582
AgsI	TTSAA	7 cut(s)	112, 202, 214, 346, 439, 451, 460
AlwI	GGATC	4 cut(s)	98, 111, 332, 345
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	81, 572
AspLEI	GCGC	2 cut(s)	156, 393
AspS9I	GGNCC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	120
BamHI	GGATCC	2 cut(s)	103, 337
BarI	GAAGNNNNNNTAC	2 cut(s)	573, 605
BbsI	GAAGAC	2 cut(s)	118, 352
BccI	CCATC	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	257
BisI	GCNGC	2 cut(s)	84, 280
BlsI	GCNGC	2 cut(s)	85, 281
Bme1390I	CCNGG	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	5 cut(s)	61, 105, 230, 339, 575
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	95
BpiI	GAAGAC	2 cut(s)	118, 352
BpuEI	CTTGAG	2 cut(s)	60, 339
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	6 cut(s)	63, 255, 270, 528, 543, 604
Bse1I	ACTGG	1 cut(s)	479
BseDI	CCNNGG	6 cut(s)	63, 255, 270, 528, 543, 604
BseGI	GGATG	3 cut(s)	86, 144, 378
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	1 cut(s)	241
Bsh1236I	CGCG	4 cut(s)	156, 209, 393, 446
BshFI	GGCC	2 cut(s)	83, 574
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	257
BsnI	GGCC	2 cut(s)	83, 574
BsoBI	CYCGRG	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	580
Bsp143I	GATC	6 cut(s)	54, 94, 103, 292, 328, 337
Bsp19I	CCATGG	4 cut(s)	270, 528, 543, 604
BspACI	CCGC	6 cut(s)	84, 101, 207, 280, 444, 478
BspANI	GGCC	2 cut(s)	83, 574
BspFNI	CGCG	4 cut(s)	156, 209, 393, 446
BspLI	GGNNCC	5 cut(s)	61, 105, 230, 339, 575
BspPI	GGATC	4 cut(s)	98, 111, 332, 345
BsrGI	TGTACA	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	479
BssECI	CCNNGG	6 cut(s)	63, 255, 270, 528, 543, 604
BssMI	GATC	6 cut(s)	54, 94, 103, 292, 328, 337
BssT1I	CCWWGG	4 cut(s)	270, 528, 543, 604
Bst6I	CTCTTC	5 cut(s)	29, 168, 218, 405, 455
BstAUI	TGTACA	1 cut(s)	580
BstDSI	CCRYGG	4 cut(s)	270, 528, 543, 604
BstF5I	GGATG	3 cut(s)	86, 144, 378
BstFNI	CGCG	4 cut(s)	156, 209, 393, 446
BstHHI	GCGC	2 cut(s)	156, 393
BstKTI	GATC	6 cut(s)	57, 97, 106, 295, 331, 340
BstMBI	GATC	6 cut(s)	54, 94, 103, 292, 328, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstSCI	CCNGG	1 cut(s)	255
BstUI	CGCG	4 cut(s)	156, 209, 393, 446
BstV2I	GAAGAC	2 cut(s)	118, 352
BstX2I	RGATCY	2 cut(s)	103, 337
BstYI	RGATCY	2 cut(s)	103, 337
BsuRI	GGCC	2 cut(s)	83, 574
BtgI	CCRYGG	4 cut(s)	270, 528, 543, 604
BtsCI	GGATG	3 cut(s)	86, 144, 378
CfoI	GCGC	2 cut(s)	156, 393
Cfr13I	GGNCC	1 cut(s)	573
CseI	GACGC	2 cut(s)	145, 382
Csp6I	GTAC	2 cut(s)	385, 581
CviAII	CATG	6 cut(s)	271, 406, 529, 544, 584, 605
CviJI	RGCY	3 cut(s)	83, 231, 574
CviKI_1	RGCY	3 cut(s)	83, 231, 574
CviQI	GTAC	2 cut(s)	385, 581
DpnI	GATC	6 cut(s)	56, 96, 105, 294, 330, 339
DpnII	GATC	6 cut(s)	54, 94, 103, 292, 328, 337
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	5 cut(s)	29, 168, 218, 405, 455
EarI	CTCTTC	5 cut(s)	29, 168, 218, 405, 455
Eco130I	CCWWGG	4 cut(s)	270, 528, 543, 604
Eco57I	CTGAAG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	573
EcoT14I	CCWWGG	4 cut(s)	270, 528, 543, 604
ErhI	CCWWGG	4 cut(s)	270, 528, 543, 604
FaeI	CATG	6 cut(s)	274, 409, 532, 547, 587, 608
FatI	CATG	6 cut(s)	270, 405, 528, 543, 583, 604
FauI	CCCGC	1 cut(s)	471
FblI	GTMKAC	2 cut(s)	159, 396
Fnu4HI	GCNGC	2 cut(s)	84, 280
FokI	GGATG	3 cut(s)	73, 151, 385
Fsp4HI	GCNGC	2 cut(s)	84, 280
GlaI	GCGC	2 cut(s)	155, 392
GluI	GCNGC	2 cut(s)	84, 280
HaeIII	GGCC	2 cut(s)	83, 574
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	2 cut(s)	145, 382
HhaI	GCGC	2 cut(s)	156, 393
Hin1II	CATG	6 cut(s)	274, 409, 532, 547, 587, 608
Hin6I	GCGC	2 cut(s)	154, 391
HinP1I	GCGC	2 cut(s)	154, 391
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	160, 397
Hpy188I	TCNGA	5 cut(s)	59, 91, 222, 247, 320
Hpy188III	TCNNGA	2 cut(s)	120, 332
Hpy8I	GTNNAC	2 cut(s)	160, 397
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	242, 599
HpyCH4V	TGCA	1 cut(s)	500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
Hsp92II	CATG	6 cut(s)	274, 409, 532, 547, 587, 608
HspAI	GCGC	2 cut(s)	154, 391
Kzo9I	GATC	6 cut(s)	54, 94, 103, 292, 328, 337
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	6 cut(s)	270, 303, 324, 460, 573, 591
LweI	GCATC	1 cut(s)	95
MalI	GATC	6 cut(s)	56, 96, 105, 294, 330, 339
MboI	GATC	6 cut(s)	54, 94, 103, 292, 328, 337
MflI	RGATCY	2 cut(s)	103, 337
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	2 cut(s)	114, 200
MnlI	CCTC	8 cut(s)	32, 73, 124, 219, 328, 358, 456, 564
MseI	TTAA	2 cut(s)	300, 507
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	257
MvnI	CGCG	4 cut(s)	156, 209, 393, 446
MwoI	GCNNNNNNNGC	1 cut(s)	475
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	4 cut(s)	270, 528, 543, 604
NdeII	GATC	6 cut(s)	54, 94, 103, 292, 328, 337
NlaIII	CATG	6 cut(s)	274, 409, 532, 547, 587, 608
NlaIV	GGNNCC	5 cut(s)	61, 105, 230, 339, 575
NmeAIII	GCCGAG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	85, 281
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PspN4I	GGNNCC	5 cut(s)	61, 105, 230, 339, 575
PspPI	GGNCC	1 cut(s)	573
PsuI	RGATCY	2 cut(s)	103, 337
RsaI	GTAC	2 cut(s)	386, 582
RsaNI	GTAC	2 cut(s)	385, 581
SaqAI	TTAA	2 cut(s)	300, 507
SatI	GCNGC	2 cut(s)	84, 280
Sau3AI	GATC	6 cut(s)	54, 94, 103, 292, 328, 337
Sau96I	GGNCC	1 cut(s)	573
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	257
SetI	ASST	4 cut(s)	24, 65, 507, 591
SfaNI	GCATC	1 cut(s)	95
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	3 cut(s)	75, 120, 354
SmoI	CTYRAG	3 cut(s)	75, 120, 354
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	6 cut(s)	84, 101, 207, 280, 444, 478
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	4 cut(s)	270, 528, 543, 604
TaqI	TCGA	4 cut(s)	13, 121, 129, 363
TasI	AATT	1 cut(s)	69
TatI	WGTACW	2 cut(s)	384, 580
TauI	GCSGC	2 cut(s)	86, 282
Tru1I	TTAA	2 cut(s)	300, 507
Tru9I	TTAA	2 cut(s)	300, 507
TspDTI	ATGAA	3 cut(s)	16, 31, 395
TspGWI	ACGGA	2 cut(s)	96, 330
XhoI	CTCGAG	1 cut(s)	120
XmiI	GTMKAC	2 cut(s)	159, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.