Ring finger domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g32080 |
| malus_domestica | MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921 |
| rosa_laevigata | RLG00000002708 RLG00000029343 RLG00000030723 |
| rosa_multiflora | Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024 |
| rosa_roxburghii | Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310 |
| rosa_rugosa | Rorug01G0007000 Rorug04G0097100 Rorug07G0148700 |
| rosa_samantha | Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300 |
| rosa_wichuraiana | Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 496 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 232 |
| AccI | GTMKAC | 3 cut(s) | 159, 272, 292 |
| AccII | CGCG | 1 cut(s) | 156 |
| AciI | CCGC | 1 cut(s) | 84 |
| AclI | AACGTT | 1 cut(s) | 114 |
| AcoI | YGGCCR | 2 cut(s) | 81, 372 |
| AcuI | CTGAAG | 1 cut(s) | 96 |
| AfaI | GTAC | 1 cut(s) | 149 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 232 |
| AgsI | TTSAA | 1 cut(s) | 202 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 268 |
| AoxI | GGCC | 2 cut(s) | 81, 372 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 331, 363 |
| AsuHPI | GGTGA | 2 cut(s) | 64, 121 |
| BccI | CCATC | 1 cut(s) | 133 |
| BceAI | ACGGC | 1 cut(s) | 382 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 268 |
| BmiI | GGNNCC | 1 cut(s) | 379 |
| BmsI | GCATC | 3 cut(s) | 95, 384, 415 |
| BpuEI | CTTGAG | 1 cut(s) | 105 |
| Bsa29I | ATCGAT | 1 cut(s) | 468 |
| BsaWI | WCCGGW | 1 cut(s) | 106 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 232 |
| Bse118I | RCCGGY | 1 cut(s) | 374 |
| Bse1I | ACTGG | 1 cut(s) | 300 |
| Bse3DI | GCAATG | 1 cut(s) | 306 |
| BseCI | ATCGAT | 1 cut(s) | 468 |
| BseGI | GGATG | 4 cut(s) | 86, 144, 222, 399 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 232 |
| BseMI | GCAATG | 1 cut(s) | 306 |
| BseNI | ACTGG | 1 cut(s) | 300 |
| Bsh1236I | CGCG | 1 cut(s) | 156 |
| BshFI | GGCC | 2 cut(s) | 83, 374 |
| BshVI | ATCGAT | 1 cut(s) | 468 |
| BsiSI | CCGG | 2 cut(s) | 107, 375 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 232 |
| BsnI | GGCC | 2 cut(s) | 83, 374 |
| Bsp143I | GATC | 3 cut(s) | 54, 94, 321 |
| BspACI | CCGC | 1 cut(s) | 84 |
| BspANI | GGCC | 2 cut(s) | 83, 374 |
| BspDI | ATCGAT | 1 cut(s) | 468 |
| BspFNI | CGCG | 1 cut(s) | 156 |
| BspLI | GGNNCC | 1 cut(s) | 379 |
| BspQI | GCTCTTC | 1 cut(s) | 440 |
| BsrDI | GCAATG | 1 cut(s) | 306 |
| BsrFI | RCCGGY | 1 cut(s) | 374 |
| BsrI | ACTGG | 1 cut(s) | 300 |
| BssAI | RCCGGY | 1 cut(s) | 374 |
| BssMI | GATC | 3 cut(s) | 54, 94, 321 |
| BssNAI | GTATAC | 1 cut(s) | 293 |
| Bst1107I | GTATAC | 1 cut(s) | 293 |
| Bst6I | CTCTTC | 3 cut(s) | 29, 168, 440 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 456 |
| BstF5I | GGATG | 4 cut(s) | 86, 144, 222, 399 |
| BstFNI | CGCG | 1 cut(s) | 156 |
| BstKTI | GATC | 3 cut(s) | 57, 97, 324 |
| BstMBI | GATC | 3 cut(s) | 54, 94, 321 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 403, 456 |
| BstUI | CGCG | 1 cut(s) | 156 |
| BstZ17I | GTATAC | 1 cut(s) | 293 |
| Bsu15I | ATCGAT | 1 cut(s) | 468 |
| BsuRI | GGCC | 2 cut(s) | 83, 374 |
| BsuTUI | ATCGAT | 1 cut(s) | 468 |
| BtsCI | GGATG | 4 cut(s) | 86, 144, 222, 399 |
| Cfr10I | RCCGGY | 1 cut(s) | 374 |
| ClaI | ATCGAT | 1 cut(s) | 468 |
| CseI | GACGC | 1 cut(s) | 145 |
| Csp6I | GTAC | 1 cut(s) | 148 |
| CviAII | CATG | 4 cut(s) | 11, 169, 227, 367 |
| CviJI | RGCY | 3 cut(s) | 83, 218, 374 |
| CviKI_1 | RGCY | 3 cut(s) | 83, 218, 374 |
| CviQI | GTAC | 1 cut(s) | 148 |
| DpnI | GATC | 3 cut(s) | 56, 96, 323 |
| DpnII | GATC | 3 cut(s) | 54, 94, 321 |
| DriI | GACNNNNNGTC | 1 cut(s) | 268 |
| EaeI | YGGCCR | 2 cut(s) | 81, 372 |
| Eam1104I | CTCTTC | 3 cut(s) | 29, 168, 440 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 268 |
| EarI | CTCTTC | 3 cut(s) | 29, 168, 440 |
| Eco57I | CTGAAG | 1 cut(s) | 96 |
| FaeI | CATG | 4 cut(s) | 14, 172, 230, 370 |
| FatI | CATG | 4 cut(s) | 10, 168, 226, 366 |
| FblI | GTMKAC | 3 cut(s) | 159, 272, 292 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| FokI | GGATG | 4 cut(s) | 73, 151, 209, 406 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| GluI | GCNGC | 1 cut(s) | 84 |
| HaeIII | GGCC | 2 cut(s) | 83, 374 |
| HapII | CCGG | 2 cut(s) | 107, 375 |
| HgaI | GACGC | 1 cut(s) | 145 |
| Hin1II | CATG | 4 cut(s) | 14, 172, 230, 370 |
| HinfI | GANTC | 2 cut(s) | 103, 269 |
| HpaII | CCGG | 2 cut(s) | 107, 375 |
| HphI | GGTGA | 2 cut(s) | 64, 121 |
| Hpy166II | GTNNAC | 4 cut(s) | 112, 160, 273, 293 |
| Hpy188I | TCNGA | 5 cut(s) | 59, 76, 91, 382, 393 |
| Hpy188III | TCNNGA | 1 cut(s) | 98 |
| Hpy8I | GTNNAC | 4 cut(s) | 112, 160, 273, 293 |
| Hpy99I | CGWCG | 1 cut(s) | 95 |
| HpyCH4IV | ACGT | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 3 cut(s) | 283, 406, 426 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 403, 456 |
| HpySE526I | ACGT | 1 cut(s) | 114 |
| Hsp92II | CATG | 4 cut(s) | 14, 172, 230, 370 |
| Kzo9I | GATC | 3 cut(s) | 54, 94, 321 |
| LguI | GCTCTTC | 1 cut(s) | 440 |
| LpnPI | CCDG | 3 cut(s) | 120, 281, 388 |
| LweI | GCATC | 3 cut(s) | 95, 384, 415 |
| MaeII | ACGT | 1 cut(s) | 114 |
| MalI | GATC | 3 cut(s) | 56, 96, 323 |
| MboI | GATC | 3 cut(s) | 54, 94, 321 |
| MboII | GAAGA | 4 cut(s) | 16, 27, 185, 457 |
| MluCI | AATT | 1 cut(s) | 242 |
| MlyI | GAGTC | 1 cut(s) | 278 |
| MmeI | TCCRAC | 2 cut(s) | 114, 291 |
| MnlI | CCTC | 7 cut(s) | 32, 124, 208, 247, 309, 355, 429 |
| MslI | CAYNNNNRTG | 2 cut(s) | 47, 50 |
| MspI | CCGG | 2 cut(s) | 107, 375 |
| MvnI | CGCG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 403, 456 |
| NdeII | GATC | 3 cut(s) | 54, 94, 321 |
| NlaIII | CATG | 4 cut(s) | 14, 172, 230, 370 |
| NlaIV | GGNNCC | 1 cut(s) | 379 |
| PciSI | GCTCTTC | 1 cut(s) | 440 |
| PfeI | GAWTC | 1 cut(s) | 103 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 232 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 1 cut(s) | 277 |
| PpsI | GAGTC | 1 cut(s) | 277 |
| PsiI | TTATAA | 1 cut(s) | 496 |
| Psp1406I | AACGTT | 1 cut(s) | 114 |
| PspN4I | GGNNCC | 1 cut(s) | 379 |
| RsaI | GTAC | 1 cut(s) | 149 |
| RsaNI | GTAC | 1 cut(s) | 148 |
| RseI | CAYNNNNRTG | 2 cut(s) | 47, 50 |
| SapI | GCTCTTC | 1 cut(s) | 440 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau3AI | GATC | 3 cut(s) | 54, 94, 321 |
| SchI | GAGTC | 1 cut(s) | 278 |
| SetI | ASST | 4 cut(s) | 24, 117, 440, 466 |
| SfaNI | GCATC | 3 cut(s) | 95, 384, 415 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 47, 50 |
| SmlI | CTYRAG | 1 cut(s) | 120 |
| SmoI | CTYRAG | 1 cut(s) | 120 |
| Sse9I | AATT | 1 cut(s) | 242 |
| SsiI | CCGC | 1 cut(s) | 84 |
| TaiI | ACGT | 1 cut(s) | 117 |
| TaqI | TCGA | 3 cut(s) | 129, 213, 468 |
| TasI | AATT | 1 cut(s) | 242 |
| TatI | WGTACW | 1 cut(s) | 147 |
| TauI | GCSGC | 1 cut(s) | 86 |
| TfiI | GAWTC | 1 cut(s) | 103 |
| TspDTI | ATGAA | 2 cut(s) | 16, 31 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 232 |
| XmiI | GTMKAC | 3 cut(s) | 159, 272, 292 |