RLG00000030723

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003280
Physical Location & Seq
Forward (+)
66492094 .. 66492630
537 bp
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UTR
Exon/CDS
Intron
RLM00000030723

Sequence Viewer

Length: 384 bp
ATGGCTTATGCAAAAAGCCTCGTGATCACCTCCACATTATTATTCATCATGTGGATGGGGATTTTGGAAACATCACAAGCCACATCCCGCAGATTCAAAGAGAACCCAAATTCCACCCTTTTCCTAGAATTTGAGCGATGGATGGTAGACTTCGACAAACATTACCCCAACGACGAAGAGAAGGAGAGGCGTTTCGCAATCTTCAAGAACAAGTTGGAGTGGGTCAGTGGGTCAAGAACTTCAACAAGCAAGGGAATCACTCTTTTACGCCGTGTTGATGTGTGGTACGGCTATGGAGCAGGGTTGGTTTGCTTGGAAGTCCGAGACTTGAGTATGGGGTACGTGAAGTTCACTCTTGTTCAATCTAGAAAAATTGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

128

Amino Acids

14.92

Weight (kDa)

9.48

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 44 - 74 9e-08 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 88
AcsI RAATTY 2 cut(s) 109, 128
AfaI GTAC 2 cut(s) 287, 341
AgsI TTSAA 4 cut(s) 97, 205, 243, 362
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
Alw26I GTCTC 1 cut(s) 318
ApoI RAATTY 2 cut(s) 109, 128
AsuHPI GGTGA 1 cut(s) 19
BauI CACGAG 1 cut(s) 20
BccI CCATC 3 cut(s) 49, 132, 136
BceAI ACGGC 2 cut(s) 255, 304
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 2 cut(s) 125, 366
BpuEI CTTGAG 1 cut(s) 349
BsaAI YACGTR 1 cut(s) 343
BseGI GGATG 3 cut(s) 60, 83, 147
BsmAI GTCTC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 1 cut(s) 88
BssMI GATC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 171
BstBAI YACGTR 1 cut(s) 343
BstF5I GGATG 3 cut(s) 60, 83, 147
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 1 cut(s) 24
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 3 cut(s) 60, 83, 147
BtsIMutI CAGTG 1 cut(s) 232
Csp6I GTAC 2 cut(s) 286, 340
CviAII CATG 1 cut(s) 49
CviJI RGCY 4 cut(s) 5, 18, 80, 291
CviKI_1 RGCY 4 cut(s) 5, 18, 80, 291
CviQI GTAC 2 cut(s) 286, 340
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
FaeI CATG 1 cut(s) 52
FaiI YATR 4 cut(s) 9, 50, 294, 335
FatI CATG 1 cut(s) 48
FauI CCCGC 1 cut(s) 95
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 1 cut(s) 147
FokI GGATG 3 cut(s) 67, 70, 154
FspBI CTAG 2 cut(s) 125, 366
Hin1II CATG 1 cut(s) 52
HinfI GANTC 2 cut(s) 93, 255
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 148, 351
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 4 cut(s) 22, 205, 234, 366
Hpy8I GTNNAC 2 cut(s) 148, 351
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 1 cut(s) 285
MaeI CTAG 2 cut(s) 125, 366
MaeII ACGT 1 cut(s) 342
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 2 cut(s) 188, 193
MluCI AATT 3 cut(s) 109, 128, 372
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 3 cut(s) 29, 40, 180
MslI CAYNNNNRTG 1 cut(s) 53
NdeII GATC 1 cut(s) 24
NlaIII CATG 1 cut(s) 52
PfeI GAWTC 2 cut(s) 93, 255
Ppu21I YACGTR 1 cut(s) 343
PsrI GAACNNNNNNTAC 2 cut(s) 332, 364
RsaI GTAC 2 cut(s) 287, 341
RsaNI GTAC 2 cut(s) 286, 340
RseI CAYNNNNRTG 1 cut(s) 53
Sau3AI GATC 1 cut(s) 24
SetI ASST 2 cut(s) 32, 345
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 3 cut(s) 109, 128, 372
SsiI CCGC 1 cut(s) 88
SspMI CTAG 2 cut(s) 125, 366
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 153
TasI AATT 3 cut(s) 109, 128, 372
TfiI GAWTC 2 cut(s) 93, 255
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 34
TspRI CASTG 1 cut(s) 232
XapI RAATTY 2 cut(s) 109, 128
XbaI TCTAGA 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 125, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.