Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Forward (+)

1499414 .. 1501147

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0007000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGCCGAAACAGAGGAAAGCTCAGGTGAGCAGAAACCCGGATCTGATTAGAGGGATCGGGAAGTACTCTCGGTCCAAGATGTACCACAAGAGAGGGCTTTGGGCTATCAAGGCCAAGAACGGCGGCTCTTTCCCTCGCCACGATAAGAAGCCCGCCGCCGACGTCCCTGCCGTCAAACCCCCCAAGTTTTACCCCGCCGACGATGTCAAGAAGCCTCTTATCAACAAGCACAAGCCCAAGCCCACCAAGCTCAGGGCAAGCATTACCCCCGGAACTGTGTTGATCATTCTGGCTGGAAGGTTCAAGGGCAAGAGGGTTGTCTTTTTGAAGCAGCTTTCTTCTGGCTTGCTTTTGGTCACTGGGCCATTCAAGATTAATGGTGTTCCTCTTAGACGGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACATCTCCGGTGTTAACGTGGAGAAGTTTGATGACAAGTACTTTGCTAAGGAGGGTCAAAAGAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAAGCAGAGAAGGAGGACAAAAATGTACTCCCGCAGGAGAAAAAGGATGACCAGAAAACTGTTGATACTACATTGATTAAAGCCATTGAGGGAGTTACAGATTTGAAGACTTATTTGGCTGCAAGGTTTTCTCTCAAGCAAGGAATGAAGCCACATGAGCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

233

Amino Acids

26.12

Weight (kDa)

10.17

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 61	3.3e-18	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	3.9e-40	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	5 cut(s)	126, 156, 159, 198, 563
AclWI	GGATC	2 cut(s)	51, 65
AcyI	GRCGYC	2 cut(s)	5, 165
AfaI	GTAC	4 cut(s)	68, 86, 479, 558
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	6 cut(s)	307, 331, 373, 429, 533, 637
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AluBI	AGCT	4 cut(s)	23, 253, 337, 691
AluI	AGCT	4 cut(s)	23, 253, 337, 691
AlwI	GGATC	2 cut(s)	51, 65
AoxI	GGCC	2 cut(s)	114, 365
ApeKI	GCWGC	2 cut(s)	334, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	75, 365
AsuC2I	CCSGG	2 cut(s)	41, 273
AsuHPI	GGTGA	2 cut(s)	40, 412
AvaII	GGWCC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	644
BbvI	GCAGC	2 cut(s)	346, 637
BceAI	ACGGC	2 cut(s)	139, 158
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	2 cut(s)	41, 273
BfaI	CTAG	1 cut(s)	700
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	4 cut(s)	127, 159, 335, 651
BlsI	GCNGC	4 cut(s)	128, 160, 336, 652
BmcAI	AGTACT	2 cut(s)	68, 479
Bme1390I	CCNGG	2 cut(s)	41, 273
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	75, 365
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	41, 273
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	644
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
Bpu10I	CCTNAGC	3 cut(s)	24, 254, 486
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	2 cut(s)	41, 273
BsaHI	GRCGYC	2 cut(s)	5, 165
BsaJI	CCNNGG	2 cut(s)	271, 432
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	271, 432
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	38, 268
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	346, 637
BshFI	GGCC	2 cut(s)	116, 367
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	3 cut(s)	41, 273, 447
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	116, 367
Bsp143I	GATC	3 cut(s)	43, 57, 285
BspACI	CCGC	5 cut(s)	126, 156, 159, 198, 563
BspANI	GGCC	2 cut(s)	116, 367
BspCNI	CTCAG	2 cut(s)	37, 267
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	51, 65
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	271, 432
BssMI	GATC	3 cut(s)	43, 57, 285
BssNI	GRCGYC	2 cut(s)	5, 165
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	280, 592
BstACI	GRCGYC	2 cut(s)	5, 165
BstC8I	GCNNGC	3 cut(s)	156, 262, 350
BstDEI	CTNAG	4 cut(s)	24, 254, 392, 486
BstF5I	GGATG	1 cut(s)	583
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	46, 60, 288
BstMBI	GATC	3 cut(s)	43, 57, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 250, 688
BstSCI	CCNGG	2 cut(s)	39, 271
BstV1I	GCAGC	2 cut(s)	346, 637
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	116, 367
BtsCI	GGATG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	3 cut(s)	156, 262, 350
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	75, 365
Csp6I	GTAC	4 cut(s)	67, 85, 478, 557
CviAII	CATG	1 cut(s)	686
CviQI	GTAC	4 cut(s)	67, 85, 478, 557
DdeI	CTNAG	4 cut(s)	24, 254, 392, 486
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	45, 59, 287
DpnII	GATC	3 cut(s)	43, 57, 285
Eco130I	CCWWGG	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	432
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	1 cut(s)	689
FaiI	YATR	2 cut(s)	414, 687
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	685
FauI	CCCGC	3 cut(s)	163, 205, 570
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	127, 159, 335, 651
FokI	GGATG	1 cut(s)	590
Fsp4HI	GCNGC	4 cut(s)	127, 159, 335, 651
FspBI	CTAG	1 cut(s)	700
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	127, 159, 335, 651
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	116, 367
HapII	CCGG	3 cut(s)	41, 273, 447
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	5, 165
Hin1II	CATG	1 cut(s)	689
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	439, 454
HindII	GTYRAC	2 cut(s)	439, 454
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	3 cut(s)	41, 273, 447
HphI	GGTGA	2 cut(s)	40, 412
Hpy166II	GTNNAC	3 cut(s)	403, 439, 454
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	3 cut(s)	61, 211, 373
Hpy8I	GTNNAC	3 cut(s)	403, 439, 454
Hpy99I	CGWCG	2 cut(s)	167, 206
HpyAV	CCTTC	4 cut(s)	294, 505, 512, 535
HpyCH4III	ACNGT	2 cut(s)	280, 592
HpyCH4IV	ACGT	2 cut(s)	165, 456
HpyCH4V	TGCA	1 cut(s)	653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 250, 688
HpyF3I	CTNAG	4 cut(s)	24, 254, 392, 486
HpySE526I	ACGT	2 cut(s)	165, 456
Hsp92I	GRCGYC	2 cut(s)	5, 165
Hsp92II	CATG	1 cut(s)	689
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	43, 57, 285
Lsp1109I	GCAGC	2 cut(s)	346, 637
MaeI	CTAG	1 cut(s)	700
MaeII	ACGT	2 cut(s)	165, 456
MaeIII	GTNAC	2 cut(s)	358, 625
MalI	GATC	3 cut(s)	45, 59, 287
MboI	GATC	3 cut(s)	43, 57, 285
MboII	GAAGA	3 cut(s)	333, 514, 649
MflI	RGATCY	1 cut(s)	43
Mly113I	GGCGCC	1 cut(s)	5
MseI	TTAA	3 cut(s)	378, 453, 609
MspI	CCGG	3 cut(s)	41, 273, 447
MspR9I	CCNGG	2 cut(s)	41, 273
MwoI	GCNNNNNNNGC	3 cut(s)	113, 250, 688
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	41, 273
NdeII	GATC	3 cut(s)	43, 57, 285
NlaIII	CATG	1 cut(s)	689
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	128, 160, 336, 652
PluTI	GGCGCC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	75, 365
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	4 cut(s)	68, 86, 479, 558
RsaNI	GTAC	4 cut(s)	67, 85, 478, 557
SaqAI	TTAA	3 cut(s)	378, 453, 609
SatI	GCNGC	4 cut(s)	127, 159, 335, 651
Sau3AI	GATC	3 cut(s)	43, 57, 285
Sau96I	GGNCC	2 cut(s)	75, 365
ScaI	AGTACT	2 cut(s)	68, 479
ScrFI	CCNGG	2 cut(s)	41, 273
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SsiI	CCGC	5 cut(s)	126, 156, 159, 198, 563
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	700
StyD4I	CCNGG	2 cut(s)	39, 271
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	280, 592
TaiI	ACGT	2 cut(s)	168, 459
TaqII	GACCGA	1 cut(s)	63
TatI	WGTACW	3 cut(s)	66, 477, 556
TauI	GCSGC	2 cut(s)	129, 161
Tru1I	TTAA	3 cut(s)	378, 453, 609
Tru9I	TTAA	3 cut(s)	378, 453, 609
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	334, 650
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	692
TspRI	CASTG	1 cut(s)	367
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	378
XspI	CTAG	1 cut(s)	700
ZraI	GACGTC	1 cut(s)	166
ZrmI	AGTACT	2 cut(s)	68, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.