Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006316.1

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Reverse (-)

8321 .. 8701

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006316.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgggttttcatcaaagaaacctcttcattcccgttctgttcatcatattgctgatcggaacctcggcaatttctcaagtggccgcatccgacgatcaagaggatccgttcaacgccatattgctgatcggaaccttggccgcatccgacgatcaggaggatccgttcaatgcttctcaagtcttcgaggaatggatggtgaagtacaagcgcgtctacaaaagcaaggaagagaaagaaaagcgttttaccatattcaaaaccgcattcaagggtttgaagaggaggcacgactggcgggaatacaaatcgtttattgcacaccttcaccagggccggctctcaaggtgtgtaatgagagcgacagcacagggcccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000746 GO:0000747 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009897 GO:0009986 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0019953 GO:0022414 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0044764 GO:0051603 GO:0051704 GO:0070011 GO:0071704 GO:0071944 GO:0098552 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04380 ko04612 ko04620 ko04621 ko04924 ko05152 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04380 map04612 map04620 map04621 map04924 map05152 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

126

Amino Acids

14.62

Weight (kDa)

9.33

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	84, 141, 264, 298
AclWI	GGATC	4 cut(s)	98, 111, 155, 168
AcoI	YGGCCR	2 cut(s)	81, 138
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	112, 169, 259, 271, 280
AjnI	CCWGG	1 cut(s)	330
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AlwI	GGATC	4 cut(s)	98, 111, 155, 168
AoxI	GGCC	4 cut(s)	81, 138, 334, 373
ApaI	GGGCCC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	3 cut(s)	334, 373, 374
AsuHPI	GGTGA	2 cut(s)	211, 320
BaeGI	GKGCMC	1 cut(s)	377
BamHI	GGATCC	2 cut(s)	103, 160
BanII	GRGCYC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	175
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	332
BisI	GCNGC	2 cut(s)	84, 141
BlsI	GCNGC	2 cut(s)	85, 142
Bme1390I	CCNGG	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	334, 373, 374
BmiI	GGNNCC	6 cut(s)	61, 105, 133, 162, 375, 376
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	95, 152
BpiI	GAAGAC	1 cut(s)	175
BpuEI	CTTGAG	3 cut(s)	60, 162, 328
BsaJI	CCNNGG	3 cut(s)	63, 135, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	3 cut(s)	63, 135, 331
BseGI	GGATG	3 cut(s)	86, 143, 201
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	298
BseSI	GKGCMC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	83, 140, 336, 375
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	4 cut(s)	83, 140, 336, 375
Bsp120I	GGGCCC	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	6 cut(s)	54, 94, 103, 126, 151, 160
BspACI	CCGC	4 cut(s)	84, 141, 264, 298
BspANI	GGCC	4 cut(s)	83, 140, 336, 375
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	6 cut(s)	61, 105, 133, 162, 375, 376
BspPI	GGATC	4 cut(s)	98, 111, 155, 168
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	63, 135, 331
BssMI	GATC	6 cut(s)	54, 94, 103, 126, 151, 160
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	332
Bst6I	CTCTTC	3 cut(s)	29, 225, 275
BstC8I	GCNNGC	1 cut(s)	338
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	3 cut(s)	86, 143, 201
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	6 cut(s)	57, 97, 106, 129, 154, 163
BstMBI	GATC	6 cut(s)	54, 94, 103, 126, 151, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	2 cut(s)	103, 160
BstYI	RGATCY	2 cut(s)	103, 160
BsuRI	GGCC	4 cut(s)	83, 140, 336, 375
BtsCI	GGATG	3 cut(s)	86, 143, 201
Cac8I	GCNNGC	1 cut(s)	338
CfoI	GCGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	334, 373, 374
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	205
CviJI	RGCY	5 cut(s)	83, 140, 336, 340, 375
CviKI_1	RGCY	5 cut(s)	83, 140, 336, 340, 375
CviQI	GTAC	1 cut(s)	205
DpnI	GATC	6 cut(s)	56, 96, 105, 128, 153, 162
DpnII	GATC	6 cut(s)	54, 94, 103, 126, 151, 160
EaeI	YGGCCR	2 cut(s)	81, 138
Eam1104I	CTCTTC	3 cut(s)	29, 225, 275
EarI	CTCTTC	3 cut(s)	29, 225, 275
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	377
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	373, 374
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	135
FaiI	YATR	3 cut(s)	47, 119, 254
FauI	CCCGC	1 cut(s)	291
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	84, 141
FokI	GGATG	3 cut(s)	73, 130, 208
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	84, 141
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	84, 141
HaeIII	GGCC	4 cut(s)	83, 140, 336, 375
HapII	CCGG	1 cut(s)	337
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	213
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	2 cut(s)	211, 320
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	4 cut(s)	59, 91, 131, 148
Hpy188III	TCNNGA	2 cut(s)	98, 155
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	2 cut(s)	95, 152
HpyAV	CCTTC	1 cut(s)	335
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HspAI	GCGC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	336
KroNI	GCCGGC	1 cut(s)	338
Kzo9I	GATC	6 cut(s)	54, 94, 103, 126, 151, 160
LpnPI	CCDG	6 cut(s)	140, 280, 317, 344, 350, 356
LweI	GCATC	2 cut(s)	95, 152
MalI	GATC	6 cut(s)	56, 96, 105, 128, 153, 162
MboI	GATC	6 cut(s)	54, 94, 103, 126, 151, 160
MboII	GAAGA	4 cut(s)	16, 175, 242, 292
MflI	RGATCY	2 cut(s)	103, 160
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	1 cut(s)	69
MmeI	TCCRAC	2 cut(s)	114, 171
MnlI	CCTC	7 cut(s)	32, 73, 94, 151, 181, 276, 279
MroNI	GCCGGC	1 cut(s)	336
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	295
NaeI	GCCGGC	1 cut(s)	338
NdeII	GATC	6 cut(s)	54, 94, 103, 126, 151, 160
NgoMIV	GCCGGC	1 cut(s)	336
NlaIV	GGNNCC	6 cut(s)	61, 105, 133, 162, 375, 376
NmeAIII	GCCGAG	1 cut(s)	44
PctI	GAATGC	1 cut(s)	266
PdiI	GCCGGC	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	85, 142
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	6 cut(s)	61, 105, 133, 162, 375, 376
PspOMI	GGGCCC	1 cut(s)	373
PspPI	GGNCC	3 cut(s)	334, 373, 374
PsuI	RGATCY	2 cut(s)	103, 160
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SatI	GCNGC	2 cut(s)	84, 141
Sau3AI	GATC	6 cut(s)	54, 94, 103, 126, 151, 160
Sau96I	GGNCC	3 cut(s)	334, 373, 374
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	5 cut(s)	24, 65, 137, 327, 350
SfaNI	GCATC	2 cut(s)	95, 152
SmlI	CTYRAG	3 cut(s)	75, 177, 343
SmoI	CTYRAG	3 cut(s)	75, 177, 343
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	4 cut(s)	84, 141, 264, 298
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	135
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	69
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	2 cut(s)	86, 143
TspDTI	ATGAA	2 cut(s)	16, 31
TspGWI	ACGGA	2 cut(s)	96, 153
XagI	CCTNNNNNAGG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.