Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Reverse (-)

37696109 .. 37699120

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGATTTGAGAAAAGGGAGTTTTTCTTATTAGTAGTACTAGTGTTGCTCAACAGTTCGGCAACATCAACAGCCACCCGTCCACTTTCAGCCAATTCTGATGATCTCATCAAAGTGTTTGAGGATTGGGCCCTCGAACACAAACGCGTCTATCCTACTGATGAAGAGAAACAAAGGCGATTTGAAAACTTCAAAGCAACGTATGAGTTCGTGGACAAATTCTACAAGGAAGGTGGTCAGAGTAAACTCTACACGGTTGGCCTGAACGCATTTGCTGACATGGCAAACGAAGAATTCTACGATGCTCATGCTTGCTTTGTAGATAATGCCGACGACGTCGTCTCAAGCTCGACCACCACCTCGTCATCATCCTCCGCTAAAGTTTATGAAAACAAAGAGCAAGAATTATGTGGCAGACTGACTGACTGGACCGCTTTGGGAATAACCAGCGCTCCAAGGGATCAAGGAGATAAGTGTGGAGCGTGTTGGGTGTTTGCAACTATCGTTGCAGTTAAAGCAGTTAATCGGCAAATCTTTGGACCAACGAGTGTTATTCCGTTATCATTGCAGCAACTTATATCCTGTGACAGTATAAGCGATGGGTGTGATAACGGAACTTATATCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04380 ko04612 ko04620 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04380 map04612 map04620 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

209

Amino Acids

23.21

Weight (kDa)

4.69

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 99	1.4e-14	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	141 - 206	2.5e-10	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AatII	GACGTC	1 cut(s)	339
AccII	CGCG	1 cut(s)	147
AciI	CCGC	2 cut(s)	375, 432
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	2 cut(s)	218, 293
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	39
AfeI	AGCGCT	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	185, 193
AhlI	ACTAGT	1 cut(s)	40
AluBI	AGCT	1 cut(s)	348
AluI	AGCT	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	468
Aor51HI	AGCGCT	1 cut(s)	451
AoxI	GGCC	2 cut(s)	129, 259
ApaI	GGGCCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	2 cut(s)	218, 293
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	4 cut(s)	129, 130, 429, 539
AvaII	GGWCC	2 cut(s)	429, 539
BaeGI	GKGCMC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	1 cut(s)	593
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BcoDI	GTCTC	1 cut(s)	346
BcuI	ACTAGT	1 cut(s)	40
BfaI	CTAG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	453
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
BmcAI	AGTACT	1 cut(s)	39
Bme18I	GGWCC	2 cut(s)	429, 539
BmgT120I	GGNCC	4 cut(s)	129, 130, 429, 539
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	1 cut(s)	368
BseMI	GCAATG	1 cut(s)	563
BseNI	ACTGG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	131, 261
BsmAI	GTCTC	1 cut(s)	346
BsmBI	CGTCTC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	131, 261
Bsp120I	GGGCCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	103, 460
BspACI	CCGC	2 cut(s)	375, 432
BspANI	GGCC	2 cut(s)	131, 261
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	2 cut(s)	103, 460
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	455
Bst4CI	ACNGT	3 cut(s)	56, 256, 590
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	313
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	2 cut(s)	106, 463
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	2 cut(s)	103, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 515
BstSLI	GKGCMC	1 cut(s)	133
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	131, 261
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	313
CfoI	GCGC	1 cut(s)	452
Cfr13I	GGNCC	4 cut(s)	129, 130, 429, 539
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	38
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	2 cut(s)	280, 308
CviJI	RGCY	5 cut(s)	74, 92, 131, 261, 348
CviKI_1	RGCY	5 cut(s)	74, 92, 131, 261, 348
CviQI	GTAC	1 cut(s)	38
DpnI	GATC	2 cut(s)	105, 462
DpnII	GATC	2 cut(s)	103, 460
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	429, 539
Eco47III	AGCGCT	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	455
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	2 cut(s)	283, 311
FaiI	YATR	8 cut(s)	204, 281, 309, 387, 409, 578, 593, 621
FatI	CATG	2 cut(s)	279, 307
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	1 cut(s)	569
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	131, 261
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	283, 311
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
Hpy166II	GTNNAC	3 cut(s)	83, 214, 245
Hpy188I	TCNGA	2 cut(s)	100, 240
Hpy8I	GTNNAC	3 cut(s)	83, 214, 245
Hpy99I	CGWCG	3 cut(s)	335, 338, 341
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	3 cut(s)	56, 256, 590
HpyCH4IV	ACGT	2 cut(s)	200, 336
HpyCH4V	TGCA	3 cut(s)	497, 509, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 515
HpySE526I	ACGT	2 cut(s)	200, 336
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	283, 311
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	103, 460
LmnI	GCTCC	2 cut(s)	457, 479
LpnPI	CCDG	4 cut(s)	275, 412, 460, 595
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	2 cut(s)	200, 336
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	2 cut(s)	105, 462
MboI	GATC	2 cut(s)	103, 460
MboII	GAAGA	2 cut(s)	176, 302
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	4 cut(s)	94, 218, 293, 404
MluI	ACGCGT	1 cut(s)	145
MnlI	CCTC	4 cut(s)	115, 143, 370, 382
MseI	TTAA	2 cut(s)	513, 522
MslI	CAYNNNNRTG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	281, 515
NdeII	GATC	2 cut(s)	103, 460
NlaIII	CATG	2 cut(s)	283, 311
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	584
PflFI	GACNNNGTC	2 cut(s)	335, 338
PkrI	GCNGC	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	131
PspOMI	GGGCCC	1 cut(s)	129
PspPI	GGNCC	4 cut(s)	129, 130, 429, 539
PsyI	GACNNNGTC	2 cut(s)	335, 338
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	513, 522
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	2 cut(s)	103, 460
Sau96I	GGNCC	4 cut(s)	129, 130, 429, 539
ScaI	AGTACT	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	5 cut(s)	203, 235, 339, 350, 362
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	2 cut(s)	429, 539
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SpeI	ACTAGT	1 cut(s)	40
Sse9I	AATT	4 cut(s)	94, 218, 293, 404
SsiI	CCGC	2 cut(s)	375, 432
SspMI	CTAG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	3 cut(s)	56, 256, 590
TaiI	ACGT	2 cut(s)	203, 339
TaqI	TCGA	2 cut(s)	135, 350
TasI	AATT	4 cut(s)	94, 218, 293, 404
TatI	WGTACW	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	513, 522
Tru9I	TTAA	2 cut(s)	513, 522
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	2 cut(s)	177, 402
TspGWI	ACGGA	2 cut(s)	546, 627
Tth111I	GACNNNGTC	2 cut(s)	335, 338
VpaK11BI	GGWCC	2 cut(s)	429, 539
XapI	RAATTY	2 cut(s)	218, 293
XspI	CTAG	1 cut(s)	41
ZraI	GACGTC	1 cut(s)	337
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.