Rw1G011970

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003280
Physical Location & Seq
Reverse (-)
26842572 .. 26843364
793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011970.1

Sequence Viewer

Length: 324 bp
ATGGGTTTTCATGGAAGAAACCTCTTCATTCCTTTTCTGTTCATCACAATGGTGATCGGAACCTCGGCAATTTCTCAAGTGGCCGCATCCGACGATCAAGAGAATCCGGTGAACGTTTCTCAAGTCTTCGAGGAATGGATGGTCAAATACAATCGCGTCTACGAGAGCAAGGAAGAGAAAGAAAAGCGTTTTGCCATATTCAAAACCACGTTCGAGTTTGTTGAGAATTTCAAAAAGCATCGGAAACACGAATTGTATACTGTAGGCCTCAACAAATTTGCTGATTTGTCCCCCGCCGAATTCCCCATCGGAGTACTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

107

Amino Acids

12.47

Weight (kDa)

6.29

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 43 - 101 4.6e-19 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 159, 257
AccII CGCG 1 cut(s) 156
AciI CCGC 2 cut(s) 84, 294
AclI AACGTT 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 3 cut(s) 226, 275, 299
AfaI GTAC 1 cut(s) 315
AgsI TTSAA 2 cut(s) 202, 232
AleI CACNNNNGTG 1 cut(s) 50
AoxI GGCC 2 cut(s) 81, 265
ApoI RAATTY 3 cut(s) 226, 275, 299
AsuHPI GGTGA 2 cut(s) 64, 121
BbsI GAAGAC 1 cut(s) 118
BccI CCATC 2 cut(s) 133, 314
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 2 cut(s) 95, 247
BpiI GAAGAC 1 cut(s) 118
BpuEI CTTGAG 2 cut(s) 60, 105
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 86, 144
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 83, 267
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 274
BsnI GGCC 2 cut(s) 83, 267
Bsp143I GATC 2 cut(s) 54, 94
BspACI CCGC 2 cut(s) 84, 294
BspANI GGCC 2 cut(s) 83, 267
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 54, 94
BssNAI GTATAC 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 29, 168
BstF5I GGATG 2 cut(s) 86, 144
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 2 cut(s) 57, 97
BstMBI GATC 2 cut(s) 54, 94
BstSFI CTRYAG 1 cut(s) 261
BstUI CGCG 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 118
BstZ17I GTATAC 1 cut(s) 258
BsuRI GGCC 2 cut(s) 83, 267
BtsCI GGATG 2 cut(s) 86, 144
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 314
CviAII CATG 1 cut(s) 11
CviJI RGCY 2 cut(s) 83, 267
CviKI_1 RGCY 2 cut(s) 83, 267
CviQI GTAC 1 cut(s) 314
DpnI GATC 2 cut(s) 56, 96
DpnII GATC 2 cut(s) 54, 94
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 29, 168
EarI CTCTTC 2 cut(s) 29, 168
Eco147I AGGCCT 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 299
FaeI CATG 1 cut(s) 14
FaiI YATR 5 cut(s) 12, 197, 258, 320, 322
FaqI GGGAC 1 cut(s) 274
FatI CATG 1 cut(s) 10
FauI CCCGC 1 cut(s) 301
FblI GTMKAC 2 cut(s) 159, 257
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 73, 151
Fsp4HI GCNGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 84
HaeIII GGCC 2 cut(s) 83, 267
HapII CCGG 1 cut(s) 107
HgaI GACGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 14
HinfI GANTC 1 cut(s) 103
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 64, 121
Hpy166II GTNNAC 3 cut(s) 112, 160, 258
Hpy188I TCNGA 4 cut(s) 59, 91, 243, 311
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 3 cut(s) 112, 160, 258
Hpy99I CGWCG 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 2 cut(s) 114, 209
HpySE526I ACGT 2 cut(s) 114, 209
Hsp92II CATG 1 cut(s) 14
Kzo9I GATC 2 cut(s) 54, 94
LpnPI CCDG 1 cut(s) 120
LweI GCATC 2 cut(s) 95, 247
MaeII ACGT 2 cut(s) 114, 209
MalI GATC 2 cut(s) 56, 96
MboI GATC 2 cut(s) 54, 94
MboII GAAGA 4 cut(s) 16, 27, 118, 185
MluCI AATT 5 cut(s) 69, 226, 251, 275, 299
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 4 cut(s) 32, 73, 124, 278
MslI CAYNNNNRTG 2 cut(s) 47, 50
MspI CCGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 156
NdeII GATC 2 cut(s) 54, 94
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 50
PceI AGGCCT 1 cut(s) 267
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 85
Psp1406I AACGTT 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 61
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
RseI CAYNNNNRTG 2 cut(s) 47, 50
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 54, 94
ScaI AGTACT 1 cut(s) 315
SetI ASST 4 cut(s) 24, 65, 117, 212
SfaNI GCATC 2 cut(s) 95, 247
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 47, 50
SmlI CTYRAG 2 cut(s) 75, 120
SmoI CTYRAG 2 cut(s) 75, 120
Sse9I AATT 5 cut(s) 69, 226, 251, 275, 299
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 2 cut(s) 84, 294
StuI AGGCCT 1 cut(s) 267
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 2 cut(s) 117, 212
TaqI TCGA 2 cut(s) 129, 213
TasI AATT 5 cut(s) 69, 226, 251, 275, 299
TatI WGTACW 1 cut(s) 313
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 16, 31
XapI RAATTY 3 cut(s) 226, 275, 299
XmiI GTMKAC 2 cut(s) 159, 257
ZrmI AGTACT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.