Rh1AG148200

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003280
Physical Location & Seq
Reverse (-)
27932876 .. 27933199
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG148200.1

Sequence Viewer

Length: 324 bp
ATGGGTTTTCATGGAAGAAACCTCTTCATTCCTTTTCTGTTCACCATAATGGTGATCGGAACCTCGGCAATTTCTCAAGTGACCGCATCCGACGATCAAGAGAATCCGGTGAACGTTTCTCAAGTCTTCGAGGAATGGATGGTCAAGTACAATCGCGTCTACAAGAGCAAGGAAGAGAAAGAAAAGCGTTTTGCCATATTCAAAACCACGTTCGAGTTTGTGGAGAATTTCAAAAAGCATCGGAAACACGAATCGTATACTGTAGGCCTCAACAACTTTGCTGATAGGTCCCCCGCCGAATTCCCCATCGGAGTACTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

107

Amino Acids

12.5

Weight (kDa)

8.01

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 43 - 101 7.9e-18 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 159, 257
AccII CGCG 1 cut(s) 156
AciI CCGC 2 cut(s) 84, 294
AclI AACGTT 1 cut(s) 114
AcsI RAATTY 2 cut(s) 226, 299
AfaI GTAC 2 cut(s) 149, 315
AgsI TTSAA 2 cut(s) 202, 232
AoxI GGCC 1 cut(s) 265
ApoI RAATTY 2 cut(s) 226, 299
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 3 cut(s) 34, 64, 121
AvaII GGWCC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 118
BccI CCATC 2 cut(s) 133, 314
BfmI CTRYAG 1 cut(s) 261
BmcAI AGTACT 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 2 cut(s) 61, 290
BmsI GCATC 2 cut(s) 95, 247
BpiI GAAGAC 1 cut(s) 118
BpuEI CTTGAG 2 cut(s) 60, 105
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 86, 144
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 274
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 54, 94
BspACI CCGC 2 cut(s) 84, 294
BspANI GGCC 1 cut(s) 267
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 61, 290
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 54, 94
BssNAI GTATAC 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 29, 168
BstF5I GGATG 2 cut(s) 86, 144
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 2 cut(s) 57, 97
BstMBI GATC 2 cut(s) 54, 94
BstSFI CTRYAG 1 cut(s) 261
BstUI CGCG 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 118
BstZ17I GTATAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 2 cut(s) 86, 144
Cfr13I GGNCC 1 cut(s) 288
CseI GACGC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 148, 314
CviAII CATG 1 cut(s) 11
CviJI RGCY 1 cut(s) 267
CviKI_1 RGCY 1 cut(s) 267
CviQI GTAC 2 cut(s) 148, 314
DpnI GATC 2 cut(s) 56, 96
DpnII GATC 2 cut(s) 54, 94
Eam1104I CTCTTC 2 cut(s) 29, 168
EarI CTCTTC 2 cut(s) 29, 168
Eco147I AGGCCT 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 299
FaeI CATG 1 cut(s) 14
FaiI YATR 6 cut(s) 12, 47, 197, 258, 320, 322
FaqI GGGAC 1 cut(s) 274
FatI CATG 1 cut(s) 10
FauI CCCGC 1 cut(s) 301
FblI GTMKAC 2 cut(s) 159, 257
FokI GGATG 2 cut(s) 73, 151
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 107
HgaI GACGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 14
HinfI GANTC 2 cut(s) 103, 251
HpaII CCGG 1 cut(s) 107
HphI GGTGA 3 cut(s) 34, 64, 121
Hpy166II GTNNAC 4 cut(s) 42, 112, 160, 258
Hpy188I TCNGA 4 cut(s) 59, 91, 243, 311
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 4 cut(s) 42, 112, 160, 258
Hpy99I CGWCG 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 2 cut(s) 114, 209
HpySE526I ACGT 2 cut(s) 114, 209
Hsp92II CATG 1 cut(s) 14
Kzo9I GATC 2 cut(s) 54, 94
LpnPI CCDG 1 cut(s) 120
LweI GCATC 2 cut(s) 95, 247
MaeII ACGT 2 cut(s) 114, 209
MaeIII GTNAC 1 cut(s) 79
MalI GATC 2 cut(s) 56, 96
MboI GATC 2 cut(s) 54, 94
MboII GAAGA 4 cut(s) 16, 27, 118, 185
MluCI AATT 3 cut(s) 69, 226, 299
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 4 cut(s) 32, 73, 124, 278
MslI CAYNNNNRTG 2 cut(s) 47, 50
MspI CCGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 156
NdeII GATC 2 cut(s) 54, 94
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 2 cut(s) 61, 290
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 79
PceI AGGCCT 1 cut(s) 267
PfeI GAWTC 2 cut(s) 103, 251
PpuMI RGGWCCY 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 61, 290
PspPI GGNCC 1 cut(s) 288
PspPPI RGGWCCY 1 cut(s) 288
RsaI GTAC 2 cut(s) 149, 315
RsaNI GTAC 2 cut(s) 148, 314
RseI CAYNNNNRTG 2 cut(s) 47, 50
Sau3AI GATC 2 cut(s) 54, 94
Sau96I GGNCC 1 cut(s) 288
ScaI AGTACT 1 cut(s) 315
SetI ASST 5 cut(s) 24, 65, 117, 212, 290
SfaNI GCATC 2 cut(s) 95, 247
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 288
SmiMI CAYNNNNRTG 2 cut(s) 47, 50
SmlI CTYRAG 2 cut(s) 75, 120
SmoI CTYRAG 2 cut(s) 75, 120
Sse9I AATT 3 cut(s) 69, 226, 299
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 2 cut(s) 84, 294
StuI AGGCCT 1 cut(s) 267
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 2 cut(s) 117, 212
TaqI TCGA 2 cut(s) 129, 213
TasI AATT 3 cut(s) 69, 226, 299
TatI WGTACW 2 cut(s) 147, 313
TfiI GAWTC 2 cut(s) 103, 251
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 2 cut(s) 226, 299
XmiI GTMKAC 2 cut(s) 159, 257
ZrmI AGTACT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.