Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Reverse (-)

32188882 .. 32189163

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG294300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGTTTTCATCGAAGAAACCTCTTCATTCCCGTTCTGTTCATCATATGGCTGATCGGAACCTCGGCAATTTCTCAAGTGGCCGCATCCGACGATCAAGAGGATCCGTTCAACGCTTCTCGAGTCTTGGAGGAATGGATGGTGAAGTACAAGCGCATCTACAAGAGCAAGGAAGAGAAAGAAAAGCGTTTTGCCATATTCAAAACCGCGTTTAAGGGTTTGAAGAGGAGGTACGACTGGCAGGAATACGAATCGTTTATAGCAGGTGTATTAGTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000746 GO:0000747 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009897 GO:0009986 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0019953 GO:0022414 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0044764 GO:0051603 GO:0051704 GO:0070011 GO:0071704 GO:0071944 GO:0098552 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04380 ko04612 ko04620 ko04621 ko04924 ko05152 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04380 map04612 map04620 map04621 map04924 map05152 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

93

Amino Acids

11.15

Weight (kDa)

9.43

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	44 - 72	9.7e-06	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccII	CGCG	1 cut(s)	209
AciI	CCGC	2 cut(s)	84, 207
AclWI	GGATC	2 cut(s)	98, 111
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	3 cut(s)	149, 233, 278
AgsI	TTSAA	3 cut(s)	112, 202, 223
AlwI	GGATC	2 cut(s)	98, 111
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	120
BamHI	GGATCC	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BccI	CCATC	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	61, 105
BmsI	GCATC	2 cut(s)	95, 165
BpuEI	CTTGAG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	86, 144
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	120
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	54, 94, 103
BspACI	CCGC	2 cut(s)	84, 207
BspANI	GGCC	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	61, 105
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	2 cut(s)	98, 111
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	54, 94, 103
Bst6I	CTCTTC	3 cut(s)	29, 168, 218
BstF5I	GGATG	2 cut(s)	86, 144
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	57, 97, 106
BstMBI	GATC	3 cut(s)	54, 94, 103
BstUI	CGCG	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	86, 144
BveI	ACCTGC	1 cut(s)	254
CfoI	GCGC	1 cut(s)	156
Csp6I	GTAC	3 cut(s)	148, 232, 277
CviJI	RGCY	2 cut(s)	52, 83
CviKI_1	RGCY	2 cut(s)	52, 83
CviQI	GTAC	3 cut(s)	148, 232, 277
DpnI	GATC	3 cut(s)	56, 96, 105
DpnII	GATC	3 cut(s)	54, 94, 103
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	3 cut(s)	29, 168, 218
EarI	CTCTTC	3 cut(s)	29, 168, 218
Eco88I	CYCGRG	1 cut(s)	120
FaiI	YATR	4 cut(s)	47, 49, 197, 260
FauNDI	CATATG	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	73, 151
Fsp4HI	GCNGC	1 cut(s)	84
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	123, 251
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	59, 91
Hpy188III	TCNNGA	2 cut(s)	98, 120
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	54, 94, 103
LpnPI	CCDG	3 cut(s)	223, 227, 249
LweI	GCATC	2 cut(s)	95, 165
MalI	GATC	3 cut(s)	56, 96, 105
MboI	GATC	3 cut(s)	54, 94, 103
MboII	GAAGA	4 cut(s)	16, 27, 185, 235
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	6 cut(s)	32, 73, 94, 124, 219, 222
MseI	TTAA	1 cut(s)	213
MvnI	CGCG	1 cut(s)	209
NdeI	CATATG	1 cut(s)	47
NdeII	GATC	3 cut(s)	54, 94, 103
NlaIV	GGNNCC	2 cut(s)	61, 105
NmeAIII	GCCGAG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	120
PaqCI	CACCTGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	61, 105
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	3 cut(s)	149, 233, 278
RsaNI	GTAC	3 cut(s)	148, 232, 277
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	3 cut(s)	54, 94, 103
SchI	GAGTC	1 cut(s)	132
SetI	ASST	4 cut(s)	24, 65, 233, 268
SfaNI	GCATC	2 cut(s)	95, 165
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	75, 120
SmoI	CTYRAG	2 cut(s)	75, 120
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	2 cut(s)	84, 207
TaqI	TCGA	2 cut(s)	13, 121
TasI	AATT	1 cut(s)	69
TatI	WGTACW	2 cut(s)	147, 276
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	16, 31
TspGWI	ACGGA	1 cut(s)	96
XhoI	CTCGAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.