Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004614.1

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Reverse (-)

119 .. 760

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004614.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgggttttcatcgaagaaacctcttcattcccgttctgttcatcatattgctgatcggaacctcggcaatcatattactgatcggaacctcggcaatttctcaagtggccgcatccgacgatcaagaggatccgttcaacgcttctcgagtcttcgaggaatggatggtgaagcacaagcgcgtctacaagagcaaggaggagaaagaaaagcgttttgccatattcaaaaccgcgttcaagggttggaagaggagccttcacaagttttctgatatgaccccggacgaaatccccatggattgccgccataacgctgatcttcttaaaatgccccctgttgacgatcaagaggatccgttcaacgcttctcaagtcttcgaggaatggatgatgaagtacaagcgcgtctacaagagcatggaagagaaagaaaagcgttttgccatatttaaaaccgcgttcaagggtttgaagaggaggcacgactggcgggaatacaaatcgtttattgcacaccttcacatgttttctgatatgaccatggacgaaatccccatgggttgccataaccctgaagatttgaggccccctttacaccttgtacatgaccttcgccgaaatccccatgggttgccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04380 ko04612 ko04620 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04380 map04612 map04620 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

213

Amino Acids

25.3

Weight (kDa)

8.97

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	186, 411
AccII	CGCG	4 cut(s)	183, 236, 408, 461
AciI	CCGC	5 cut(s)	111, 234, 307, 459, 493
AclWI	GGATC	4 cut(s)	125, 138, 350, 363
AcoI	YGGCCR	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	2 cut(s)	401, 606
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	6 cut(s)	139, 229, 241, 364, 466, 475
AlwI	GGATC	4 cut(s)	125, 138, 350, 363
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	108, 587
AspLEI	GCGC	2 cut(s)	183, 408
AspS9I	GGNCC	1 cut(s)	588
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	147
BamHI	GGATCC	2 cut(s)	130, 355
BarI	GAAGNNNNNNTAC	2 cut(s)	597, 629
BbsI	GAAGAC	2 cut(s)	145, 370
BccI	CCATC	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	284
BisI	GCNGC	2 cut(s)	111, 307
BlsI	GCNGC	2 cut(s)	112, 308
Bme1390I	CCNGG	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	6 cut(s)	61, 88, 132, 257, 357, 590
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	122
BpiI	GAAGAC	2 cut(s)	145, 370
BpuEI	CTTGAG	2 cut(s)	87, 357
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	7 cut(s)	63, 90, 282, 297, 543, 558, 628
Bse1I	ACTGG	1 cut(s)	494
BseDI	CCNNGG	7 cut(s)	63, 90, 282, 297, 543, 558, 628
BseGI	GGATG	3 cut(s)	113, 171, 396
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	3 cut(s)	215, 268, 493
Bsh1236I	CGCG	4 cut(s)	183, 236, 408, 461
BshFI	GGCC	2 cut(s)	110, 589
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	284
BsnI	GGCC	2 cut(s)	110, 589
BsoBI	CYCGRG	1 cut(s)	147
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
Bsp19I	CCATGG	4 cut(s)	297, 543, 558, 628
BspACI	CCGC	5 cut(s)	111, 234, 307, 459, 493
BspANI	GGCC	2 cut(s)	110, 589
BspFNI	CGCG	4 cut(s)	183, 236, 408, 461
BspLI	GGNNCC	6 cut(s)	61, 88, 132, 257, 357, 590
BspPI	GGATC	4 cut(s)	125, 138, 350, 363
BsrGI	TGTACA	1 cut(s)	604
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	7 cut(s)	63, 90, 282, 297, 543, 558, 628
BssMI	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
BssT1I	CCWWGG	4 cut(s)	297, 543, 558, 628
Bst6I	CTCTTC	4 cut(s)	29, 245, 420, 470
BstAUI	TGTACA	1 cut(s)	604
BstDSI	CCRYGG	4 cut(s)	297, 543, 558, 628
BstF5I	GGATG	3 cut(s)	113, 171, 396
BstFNI	CGCG	4 cut(s)	183, 236, 408, 461
BstHHI	GCGC	2 cut(s)	183, 408
BstKTI	GATC	7 cut(s)	57, 84, 124, 133, 322, 349, 358
BstMBI	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	282
BstUI	CGCG	4 cut(s)	183, 236, 408, 461
BstV2I	GAAGAC	2 cut(s)	145, 370
BstX2I	RGATCY	2 cut(s)	130, 355
BstYI	RGATCY	2 cut(s)	130, 355
BsuRI	GGCC	2 cut(s)	110, 589
BtgI	CCRYGG	4 cut(s)	297, 543, 558, 628
BtsCI	GGATG	3 cut(s)	113, 171, 396
CfoI	GCGC	2 cut(s)	183, 408
Cfr13I	GGNCC	1 cut(s)	588
CseI	GACGC	2 cut(s)	172, 397
Csp6I	GTAC	2 cut(s)	400, 605
CviAII	CATG	7 cut(s)	298, 421, 526, 544, 559, 608, 629
CviJI	RGCY	3 cut(s)	110, 258, 589
CviKI_1	RGCY	3 cut(s)	110, 258, 589
CviQI	GTAC	2 cut(s)	400, 605
DpnI	GATC	7 cut(s)	56, 83, 123, 132, 321, 348, 357
DpnII	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
DraI	TTTAAA	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	4 cut(s)	29, 245, 420, 470
EarI	CTCTTC	4 cut(s)	29, 245, 420, 470
Eco130I	CCWWGG	4 cut(s)	297, 543, 558, 628
Eco57I	CTGAAG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	588
EcoT14I	CCWWGG	4 cut(s)	297, 543, 558, 628
ErhI	CCWWGG	4 cut(s)	297, 543, 558, 628
FaeI	CATG	7 cut(s)	301, 424, 529, 547, 562, 611, 632
FatI	CATG	7 cut(s)	297, 420, 525, 543, 558, 607, 628
FauI	CCCGC	1 cut(s)	486
FblI	GTMKAC	2 cut(s)	186, 411
Fnu4HI	GCNGC	2 cut(s)	111, 307
FokI	GGATG	3 cut(s)	100, 178, 403
Fsp4HI	GCNGC	2 cut(s)	111, 307
GlaI	GCGC	2 cut(s)	182, 407
GluI	GCNGC	2 cut(s)	111, 307
HaeIII	GGCC	2 cut(s)	110, 589
HapII	CCGG	1 cut(s)	284
HgaI	GACGC	2 cut(s)	172, 397
HhaI	GCGC	2 cut(s)	183, 408
Hin1II	CATG	7 cut(s)	301, 424, 529, 547, 562, 611, 632
Hin6I	GCGC	2 cut(s)	181, 406
HinP1I	GCGC	2 cut(s)	181, 406
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	187, 343, 412
Hpy188I	TCNGA	5 cut(s)	59, 86, 118, 274, 535
Hpy188III	TCNNGA	3 cut(s)	125, 147, 350
Hpy8I	GTNNAC	3 cut(s)	187, 343, 412
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	269, 530, 623
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
Hsp92II	CATG	7 cut(s)	301, 424, 529, 547, 562, 611, 632
HspAI	GCGC	2 cut(s)	181, 406
Kzo9I	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	4 cut(s)	297, 351, 475, 588
LweI	GCATC	1 cut(s)	122
MalI	GATC	7 cut(s)	56, 83, 123, 132, 321, 348, 357
MboI	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
MboII	GAAGA	9 cut(s)	16, 27, 145, 262, 314, 370, 437, 487, 590
MflI	RGATCY	2 cut(s)	130, 355
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	2 cut(s)	141, 227
MseI	TTAA	2 cut(s)	327, 453
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	284
MvnI	CGCG	4 cut(s)	183, 236, 408, 461
MwoI	GCNNNNNNNGC	1 cut(s)	490
NciI	CCSGG	1 cut(s)	284
NcoI	CCATGG	4 cut(s)	297, 543, 558, 628
NdeII	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
NlaIII	CATG	7 cut(s)	301, 424, 529, 547, 562, 611, 632
NlaIV	GGNNCC	6 cut(s)	61, 88, 132, 257, 357, 590
NmeAIII	GCCGAG	2 cut(s)	44, 71
NspI	RCATGY	1 cut(s)	529
PaeR7I	CTCGAG	1 cut(s)	147
PciI	ACATGT	1 cut(s)	525
PkrI	GCNGC	2 cut(s)	112, 308
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PscI	ACATGT	1 cut(s)	525
PspN4I	GGNNCC	6 cut(s)	61, 88, 132, 257, 357, 590
PspPI	GGNCC	1 cut(s)	588
PsuI	RGATCY	2 cut(s)	130, 355
RsaI	GTAC	2 cut(s)	401, 606
RsaNI	GTAC	2 cut(s)	400, 605
SaqAI	TTAA	2 cut(s)	327, 453
SatI	GCNGC	2 cut(s)	111, 307
Sau3AI	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
Sau96I	GGNCC	1 cut(s)	588
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	6 cut(s)	24, 65, 92, 522, 603, 615
SfaNI	GCATC	1 cut(s)	122
Sfr274I	CTCGAG	1 cut(s)	147
SlaI	CTCGAG	1 cut(s)	147
SmlI	CTYRAG	3 cut(s)	102, 147, 372
SmoI	CTYRAG	3 cut(s)	102, 147, 372
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	5 cut(s)	111, 234, 307, 459, 493
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	4 cut(s)	297, 543, 558, 628
TaqI	TCGA	4 cut(s)	13, 148, 156, 381
TasI	AATT	1 cut(s)	96
TatI	WGTACW	2 cut(s)	399, 604
TauI	GCSGC	2 cut(s)	113, 309
Tru1I	TTAA	2 cut(s)	327, 453
Tru9I	TTAA	2 cut(s)	327, 453
TspDTI	ATGAA	3 cut(s)	16, 31, 410
TspGWI	ACGGA	2 cut(s)	123, 348
XceI	RCATGY	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	147
XmiI	GTMKAC	2 cut(s)	186, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.