Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002886.1

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Forward (+)

657 .. 989

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002886.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgcgttttcatcgaagaaacctcttcattcccgttctgttcatcatattgctgatcggaacctcggcaatttctcaagtggccgcatccgacgatcaagaggatccgttcaacgcttctcgagtcttcgaggaatggatggtgaagtacaagcgcgtctacaagagcaaggaagagaaagaaaagcgttttgccatattcaaaaccgcgttcaagggtttgaagatgggccttcacaagttttctgatatgactgtggacgaaatccccatgggttgccgccataaccctgaagttttgagatgtgtactggttttcaagagcaaacgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000746 GO:0000747 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009897 GO:0009986 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0019953 GO:0022414 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0044764 GO:0051603 GO:0051704 GO:0070011 GO:0071704 GO:0071944 GO:0098552 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04380 ko04612 ko04620 ko04621 ko04924 ko05152 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04380 map04612 map04620 map04621 map04924 map05152 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

110

Amino Acids

12.97

Weight (kDa)

9.78

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	2 cut(s)	156, 209
AciI	CCGC	3 cut(s)	84, 207, 280
AclI	AACGTT	1 cut(s)	328
AclWI	GGATC	2 cut(s)	98, 111
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	149, 309
AgsI	TTSAA	5 cut(s)	112, 202, 214, 223, 319
AlwI	GGATC	2 cut(s)	98, 111
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	81, 229
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	120
BamHI	GGATCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	118
BccI	CCATC	2 cut(s)	133, 220
BisI	GCNGC	2 cut(s)	84, 280
BlsI	GCNGC	2 cut(s)	85, 281
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	61, 105
BmsI	GCATC	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	63, 270
Bse1I	ACTGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	63, 270
BseGI	GGATG	2 cut(s)	86, 144
BseNI	ACTGG	1 cut(s)	315
Bsh1236I	CGCG	2 cut(s)	156, 209
BshFI	GGCC	2 cut(s)	83, 231
BsiHKCI	CYCGRG	1 cut(s)	120
BsnI	GGCC	2 cut(s)	83, 231
BsoBI	CYCGRG	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	54, 94, 103
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	3 cut(s)	84, 207, 280
BspANI	GGCC	2 cut(s)	83, 231
BspFNI	CGCG	2 cut(s)	156, 209
BspLI	GGNNCC	2 cut(s)	61, 105
BspPI	GGATC	2 cut(s)	98, 111
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	63, 270
BssMI	GATC	3 cut(s)	54, 94, 103
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	2 cut(s)	29, 168
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	86, 144
BstFNI	CGCG	2 cut(s)	156, 209
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	57, 97, 106
BstMBI	GATC	3 cut(s)	54, 94, 103
BstUI	CGCG	2 cut(s)	156, 209
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	83, 231
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	86, 144
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	148, 308
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	2 cut(s)	83, 231
CviKI_1	RGCY	2 cut(s)	83, 231
CviQI	GTAC	2 cut(s)	148, 308
DpnI	GATC	3 cut(s)	56, 96, 105
DpnII	GATC	3 cut(s)	54, 94, 103
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	29, 168
EarI	CTCTTC	2 cut(s)	29, 168
Eco130I	CCWWGG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	274
FaiI	YATR	5 cut(s)	47, 197, 251, 272, 285
FatI	CATG	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	84, 280
FokI	GGATG	2 cut(s)	73, 151
Fsp4HI	GCNGC	2 cut(s)	84, 280
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	84, 280
HaeIII	GGCC	2 cut(s)	83, 231
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	123
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	3 cut(s)	160, 259, 308
Hpy188I	TCNGA	3 cut(s)	59, 91, 247
Hpy188III	TCNNGA	3 cut(s)	98, 120, 319
Hpy8I	GTNNAC	3 cut(s)	160, 259, 308
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	328
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	54, 94, 103
LpnPI	CCDG	2 cut(s)	296, 303
LweI	GCATC	1 cut(s)	95
MaeII	ACGT	1 cut(s)	328
MalI	GATC	3 cut(s)	56, 96, 105
MboI	GATC	3 cut(s)	54, 94, 103
MboII	GAAGA	5 cut(s)	16, 27, 118, 185, 235
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	32, 73, 94, 124
MvnI	CGCG	2 cut(s)	156, 209
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	3 cut(s)	54, 94, 103
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	61, 105
NmeAIII	GCCGAG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	85, 281
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp1406I	AACGTT	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	61, 105
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	2 cut(s)	149, 309
RsaNI	GTAC	2 cut(s)	148, 308
SatI	GCNGC	2 cut(s)	84, 280
Sau3AI	GATC	3 cut(s)	54, 94, 103
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	132
SetI	ASST	3 cut(s)	24, 65, 331
SfaNI	GCATC	1 cut(s)	95
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	75, 120
SmoI	CTYRAG	2 cut(s)	75, 120
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	3 cut(s)	84, 207, 280
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	3 cut(s)	13, 121, 129
TasI	AATT	1 cut(s)	69
TatI	WGTACW	2 cut(s)	147, 307
TauI	GCSGC	2 cut(s)	86, 282
TspDTI	ATGAA	2 cut(s)	16, 31
TspGWI	ACGGA	1 cut(s)	96
XhoI	CTCGAG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.