Rroxscaffold_4G00331310

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003280
Physical Location & Seq
Forward (+)
65230455 .. 65230922
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331310.1

Sequence Viewer

Length: 468 bp
ATGGCTTATGCAAAAGGCCTCGCGATCACCTCCACATTATTATTCATCATGTGGCTGGGGATTTTGGGGACATCACAAGCCACATCCCGCGGATTCAAAGAGAATCCAAATTCCACTCTTTTCCTAGAATTTGAGCGATGGATGGTAGCCTTCGACAAACATTACCCGAACGACGAAGAGAAGGAGAGGCGTTTCGCAATCTTCAAGAACAAGTTGGAGTGGGTCAAGAACTTCAACAAGCAAGGGAATCACTCTTTTACGGTAGGAATCAATCAATTTTCTGATATGACCCCTGATGAATTCCGGCCATGTGCTACAGGCCACCGCCGCCACCCCAGCTTAAGCTCTAGTGTGGTCGACTCCTCCAGGTGGCTGGTCTGGGTTCTGCCTTTATTTGGCATCATAGCCGTGTTGATGTGTGGTACGGCTATGGAGCAGGGTTGGTTTGCTTGGAAGTCCAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04380 ko04612 ko04620 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04380 map04612 map04620 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

155

Amino Acids

17.86

Weight (kDa)

9.23

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 44 - 101 1.2e-20 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AccII CGCG 2 cut(s) 23, 90
AciI CCGC 4 cut(s) 88, 90, 325, 328
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 3 cut(s) 109, 128, 299
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 2 cut(s) 369, 395
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 97, 205, 235
AjnI CCWGG 1 cut(s) 365
AluBI AGCT 2 cut(s) 339, 345
AluI AGCT 2 cut(s) 339, 345
AoxI GGCC 3 cut(s) 16, 305, 319
ApoI RAATTY 3 cut(s) 109, 128, 299
AsuHPI GGTGA 1 cut(s) 19
BccI CCATC 2 cut(s) 132, 136
BceAI ACGGC 2 cut(s) 392, 441
BciT130I CCWGG 1 cut(s) 367
BfaI CTAG 2 cut(s) 125, 348
BfmI CTRYAG 1 cut(s) 315
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 367
BmsI GCATC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 395
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 83, 147
BseLI CCNNNNNNNGG 2 cut(s) 369, 395
BseRI GAGGAG 1 cut(s) 352
BseYI CCCAGC 2 cut(s) 55, 335
Bsh1236I CGCG 2 cut(s) 23, 90
BshFI GGCC 3 cut(s) 18, 307, 321
BsiSI CCGG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 369, 395
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 3 cut(s) 18, 307, 321
Bsp143I GATC 1 cut(s) 24
Bsp68I TCGCGA 1 cut(s) 23
BspACI CCGC 4 cut(s) 88, 90, 325, 328
BspANI GGCC 3 cut(s) 18, 307, 321
BspFNI CGCG 2 cut(s) 23, 90
BspTI CTTAAG 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 171
BstAFI CTTAAG 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 2 cut(s) 83, 147
BstFNI CGCG 2 cut(s) 23, 90
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 327, 336
BstNI CCWGG 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 2 cut(s) 23, 90
BstXI CCANNNNNNTGG 1 cut(s) 373
BsuRI GGCC 3 cut(s) 18, 307, 321
BtgI CCRYGG 1 cut(s) 88
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 2 cut(s) 83, 147
BtuMI TCGCGA 1 cut(s) 23
Cfr42I CCGCGG 1 cut(s) 91
Csp6I GTAC 1 cut(s) 423
CviAII CATG 2 cut(s) 49, 309
CviQI GTAC 1 cut(s) 423
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 365
FaeI CATG 2 cut(s) 52, 312
FaiI YATR 6 cut(s) 9, 50, 287, 310, 404, 431
FaqI GGGAC 1 cut(s) 82
FatI CATG 2 cut(s) 48, 308
FauI CCCGC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 2 cut(s) 70, 154
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 2 cut(s) 125, 348
GluI GCNGC 1 cut(s) 328
GsaI CCCAGC 2 cut(s) 59, 339
GsuI CTGGAG 1 cut(s) 349
HaeIII GGCC 3 cut(s) 18, 307, 321
HapII CCGG 1 cut(s) 304
Hin1II CATG 2 cut(s) 52, 312
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 5 cut(s) 93, 103, 247, 267, 359
HpaII CCGG 1 cut(s) 304
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 3 cut(s) 22, 205, 226
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 160, 175
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 336
Hsp92II CATG 2 cut(s) 52, 312
KspI CCGCGG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 433
LweI GCATC 1 cut(s) 408
MaeI CTAG 2 cut(s) 125, 348
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 2 cut(s) 188, 193
MluCI AATT 4 cut(s) 109, 128, 275, 299
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 4 cut(s) 29, 40, 180, 373
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 90
MspCI CTTAAG 1 cut(s) 340
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 367
MvaI CCWGG 1 cut(s) 367
MvnI CGCG 2 cut(s) 23, 90
MwoI GCNNNNNNNGC 2 cut(s) 327, 336
NdeII GATC 1 cut(s) 24
NlaIII CATG 2 cut(s) 52, 312
NruI TCGCGA 1 cut(s) 23
PceI AGGCCT 1 cut(s) 18
PfeI GAWTC 4 cut(s) 93, 103, 247, 267
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 365
PspFI CCCAGC 2 cut(s) 55, 335
PspGI CCWGG 1 cut(s) 365
RruI TCGCGA 1 cut(s) 23
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 407
SacII CCGCGG 1 cut(s) 91
SalI GTCGAC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 1 cut(s) 24
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 367
SetI ASST 4 cut(s) 32, 341, 347, 371
SfaNI GCATC 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 315
Sfr303I CCGCGG 1 cut(s) 91
SgrBI CCGCGG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 4 cut(s) 109, 128, 275, 299
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 4 cut(s) 88, 90, 325, 328
SspMI CTAG 2 cut(s) 125, 348
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 2 cut(s) 153, 357
TasI AATT 4 cut(s) 109, 128, 275, 299
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 4 cut(s) 93, 103, 247, 267
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 34, 312
Vha464I CTTAAG 1 cut(s) 340
XapI RAATTY 3 cut(s) 109, 128, 299
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 2 cut(s) 125, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.