Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Reverse (-)

38431042 .. 38431800

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002708

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGTTCGTGGACAAATTCTACAAGGAAGGTGGTGAGAGTAAACTCTGCACGGTCGATCGACCTGAATGCATTTGCTGACATGACAAACGAAGAATTCTACGATGCTCATGCTTGCTTTGTAGATAATGCCAACGACGTAGTCTCAAGCTCGACCACCACCTCGTCATCATCCTCCGCTAAAGTTTATGAAAACAAAGAGCAAGAATTATGTGGCAGACAGACTGACAAGACCGTTTTGGGAATAACCAGCACTCCAAGGGATCAAGGAGATAAGTGTGGATCATGTTGGGTGTTTGCGACGGCTGCTGCAGGTGAAGCAGTTAATCAGCAAACCTTTGGACCAATGAGGGTCGTTCCGTTATCAGTGCAACAACTCATATCTTGTGACAGTAAAAGCGATGGGTGTATGGGTGGAAAGCCTGAGACTGCCTATGACTACATCGAATCAAACGGAGGGCTTAGTAGTGAAGAGGACTATCCATATGCAGCTATCAACGAGAGCTGCCAGGCGAATTTACATCCTAACGTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

179

Amino Acids

19.17

Weight (kDa)

4.53

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	85 - 172	7.3e-24	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	302
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	270, 289
AcsI	RAATTY	3 cut(s)	16, 95, 514
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	3 cut(s)	150, 491, 504
AluI	AGCT	3 cut(s)	150, 491, 504
Alw26I	GTCTC	2 cut(s)	148, 419
AlwI	GGATC	2 cut(s)	270, 289
ApeKI	GCWGC	4 cut(s)	305, 308, 488, 504
ApoI	RAATTY	3 cut(s)	16, 95, 514
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	46, 326
AvaII	GGWCC	1 cut(s)	341
BbvI	GCAGC	4 cut(s)	292, 295, 491, 500
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	318
BcgI	CGANNNNNNTGC	4 cut(s)	50, 84, 92, 126
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	148, 419
BfmI	CTRYAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	4 cut(s)	306, 309, 489, 505
BlsI	GCNGC	4 cut(s)	307, 310, 490, 506
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	170, 520
BseMII	CTCAG	1 cut(s)	414
BseXI	GCAGC	4 cut(s)	292, 295, 491, 500
BsgI	GTGCAG	1 cut(s)	33
Bsh1285I	CGRYCG	2 cut(s)	56, 60
BsiEI	CGRYCG	2 cut(s)	56, 60
BsmAI	GTCTC	2 cut(s)	148, 419
BsmI	GAATGC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	57, 262, 281
BspACI	CCGC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	270, 289
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	3 cut(s)	57, 262, 281
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	3 cut(s)	54, 235, 392
Bst6I	CTCTTC	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	423, 461
BstF5I	GGATG	2 cut(s)	170, 520
BstKTI	GATC	3 cut(s)	60, 265, 284
BstMAI	GTCTC	2 cut(s)	148, 419
BstMBI	GATC	3 cut(s)	57, 262, 281
BstMCI	CGRYCG	2 cut(s)	56, 60
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 317
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	4 cut(s)	292, 295, 491, 500
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	170, 520
BtsIMutI	CAGTG	1 cut(s)	372
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	341
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	3 cut(s)	82, 110, 285
CviJI	RGCY	6 cut(s)	150, 305, 421, 460, 491, 504
CviKI_1	RGCY	6 cut(s)	150, 305, 421, 460, 491, 504
DdeI	CTNAG	2 cut(s)	423, 461
DpnI	GATC	3 cut(s)	59, 264, 283
DpnII	GATC	3 cut(s)	57, 262, 281
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	341
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	3 cut(s)	85, 113, 288
FatI	CATG	3 cut(s)	81, 109, 284
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	4 cut(s)	306, 309, 489, 505
FokI	GGATG	2 cut(s)	157, 507
Fsp4HI	GCNGC	4 cut(s)	306, 309, 489, 505
GluI	GCNGC	4 cut(s)	306, 309, 489, 505
Hin1II	CATG	3 cut(s)	85, 113, 288
HinfI	GANTC	1 cut(s)	446
HphI	GGTGA	2 cut(s)	46, 326
Hpy166II	GTNNAC	2 cut(s)	12, 43
Hpy8I	GTNNAC	2 cut(s)	12, 43
Hpy99I	CGWCG	2 cut(s)	140, 304
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	3 cut(s)	54, 235, 392
HpyCH4IV	ACGT	2 cut(s)	138, 528
HpyCH4V	TGCA	5 cut(s)	50, 71, 311, 370, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 317
HpyF3I	CTNAG	2 cut(s)	423, 461
HpySE526I	ACGT	2 cut(s)	138, 528
Hsp92II	CATG	3 cut(s)	85, 113, 288
Kzo9I	GATC	3 cut(s)	57, 262, 281
LpnPI	CCDG	6 cut(s)	77, 262, 297, 435, 494, 521
Lsp1109I	GCAGC	4 cut(s)	292, 295, 491, 500
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	2 cut(s)	138, 528
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	3 cut(s)	59, 264, 283
MboI	GATC	3 cut(s)	57, 262, 281
MboII	GAAGA	2 cut(s)	104, 482
MluCI	AATT	4 cut(s)	16, 95, 206, 514
MnlI	CCTC	5 cut(s)	172, 184, 342, 449, 466
Mph1103I	ATGCAT	1 cut(s)	73
MseI	TTAA	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	305, 317
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	3 cut(s)	57, 262, 281
NlaIII	CATG	3 cut(s)	85, 113, 288
NmuCI	GTSAC	1 cut(s)	386
NsiI	ATGCAT	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	302
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	446
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	307, 310, 490, 506
Ple19I	CGATCG	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	313
PsyI	GACNNNGTC	1 cut(s)	140
PvuI	CGATCG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	306, 309, 489, 505
Sau3AI	GATC	3 cut(s)	57, 262, 281
Sau96I	GGNCC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	509
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	4 cut(s)	16, 95, 206, 514
SsiI	CCGC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	3 cut(s)	54, 235, 392
TaiI	ACGT	2 cut(s)	141, 531
TaqI	TCGA	4 cut(s)	56, 60, 152, 444
TasI	AATT	4 cut(s)	16, 95, 206, 514
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	4 cut(s)	305, 308, 488, 504
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	2 cut(s)	348, 468
TspRI	CASTG	1 cut(s)	372
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	3 cut(s)	16, 95, 514
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.