Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8234753.1

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Reverse (-)

182 .. 652

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8234753.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggcttatacaaaaagcctcgcgatcacctccacattattattcatcatgtggctggggattttgggaacatcacaagccacatcccgcagattcaaagagaatccaaattctactcttttcctagaatttgagcgatggatggcagccttcgacaaacattacccgaacgacgaagagaaggagaggcgttttgcaatcttcaagaacaagttggagtgggtcaagaacttcaacaagcaagggaatcactcttttacggtaggaatcaatcaattttctgatatgacccctgatgaattccggctatgtgctactggccgccgccgcagccaccccagcttaagctctagtgtggtcgactcctccaggtggctgatctgggttctgcctttatttggcattatagccgtgttgatgtgtggtacggctatggagcagggttggtttgcttggaagtccgagacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

156

Amino Acids

18.13

Weight (kDa)

9.26

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	23
AciI	CCGC	4 cut(s)	88, 322, 325, 328
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	3 cut(s)	109, 128, 299
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	2 cut(s)	372, 398
AflII	CTTAAG	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	97, 205, 235
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	2 cut(s)	342, 348
AluI	AGCT	2 cut(s)	342, 348
Alw26I	GTCTC	1 cut(s)	458
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	146, 330
ApoI	RAATTY	3 cut(s)	109, 128, 299
AsuHPI	GGTGA	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	158, 342
BccI	CCATC	2 cut(s)	132, 136
BceAI	ACGGC	2 cut(s)	395, 444
BciT130I	CCWGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	125, 351
BfrI	CTTAAG	1 cut(s)	343
BisI	GCNGC	5 cut(s)	147, 322, 325, 328, 331
BlsI	GCNGC	5 cut(s)	148, 323, 326, 329, 332
Bme1390I	CCNGG	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 398
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	370
BseGI	GGATG	2 cut(s)	83, 147
BseLI	CCNNNNNNNGG	2 cut(s)	372, 398
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	158, 342
BseYI	CCCAGC	2 cut(s)	55, 338
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	372, 398
BsmAI	GTCTC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	24, 378
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	4 cut(s)	88, 322, 325, 328
BspANI	GGCC	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	24, 378
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	171
BstAFI	CTTAAG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	83, 147
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	27, 381
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	2 cut(s)	24, 378
BstMWI	GCNNNNNNNGC	3 cut(s)	327, 330, 339
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	158, 342
BsuRI	GGCC	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	83, 147
BtuMI	TCGCGA	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	1 cut(s)	426
DpnI	GATC	2 cut(s)	26, 380
DpnII	GATC	2 cut(s)	24, 378
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	368
FaeI	CATG	1 cut(s)	52
FaiI	YATR	6 cut(s)	9, 50, 287, 310, 407, 434
FatI	CATG	1 cut(s)	48
FauI	CCCGC	1 cut(s)	95
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	147, 322, 325, 328, 331
FokI	GGATG	2 cut(s)	70, 154
Fsp4HI	GCNGC	5 cut(s)	147, 322, 325, 328, 331
FspBI	CTAG	2 cut(s)	125, 351
GluI	GCNGC	5 cut(s)	147, 322, 325, 328, 331
GsaI	CCCAGC	2 cut(s)	59, 342
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	304
Hin1II	CATG	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	5 cut(s)	93, 103, 247, 267, 362
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	283, 463
Hpy188III	TCNNGA	3 cut(s)	22, 205, 226
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	160, 175
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	3 cut(s)	327, 330, 339
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	24, 378
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	9 cut(s)	41, 303, 306, 317, 352, 355, 367, 382, 425
Lsp1109I	GCAGC	2 cut(s)	158, 342
MaeI	CTAG	2 cut(s)	125, 351
MalI	GATC	2 cut(s)	26, 380
MboI	GATC	2 cut(s)	24, 378
MboII	GAAGA	2 cut(s)	188, 193
MluCI	AATT	4 cut(s)	109, 128, 275, 299
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	4 cut(s)	29, 40, 180, 376
MseI	TTAA	1 cut(s)	344
MspCI	CTTAAG	1 cut(s)	343
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	327, 330, 339
NdeII	GATC	2 cut(s)	24, 378
NlaIII	CATG	1 cut(s)	52
NruI	TCGCGA	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	93, 103, 247, 267
PkrI	GCNGC	5 cut(s)	148, 323, 326, 329, 332
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	368
PspFI	CCCAGC	2 cut(s)	55, 338
PspGI	CCWGG	1 cut(s)	368
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	5 cut(s)	147, 322, 325, 328, 331
Sau3AI	GATC	2 cut(s)	24, 378
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	370
SetI	ASST	4 cut(s)	32, 344, 350, 374
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	4 cut(s)	109, 128, 275, 299
SsiI	CCGC	4 cut(s)	88, 322, 325, 328
SspMI	CTAG	2 cut(s)	125, 351
StyD4I	CCNGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	2 cut(s)	153, 360
TasI	AATT	4 cut(s)	109, 128, 275, 299
TauI	GCSGC	3 cut(s)	324, 327, 330
TfiI	GAWTC	4 cut(s)	93, 103, 247, 267
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseI	GCWGC	2 cut(s)	146, 330
TspDTI	ATGAA	2 cut(s)	34, 312
Vha464I	CTTAAG	1 cut(s)	343
XapI	RAATTY	3 cut(s)	109, 128, 299
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	2 cut(s)	125, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.