Rh1AG017800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003280
Physical Location & Seq
Reverse (-)
2995332 .. 3009435
14104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG017800.1

Sequence Viewer

Length: 303 bp
ATGGCAGCCTTCGACAAACATTACCCGAACGACGAAGAGAAGGAGAGGCGTTTCGCAATCTTCAAGAACAAGTTGGAGTGGGTCAAGAACTTCAACAAGCAAGGGAATCACTCTTTTACGGGATGGAAGTCTGGCGTGGGCTCCGCATATTCGGGCGGCGGCGTGGGTCTGATGGTTTTGAGCGGCGGCAAAGTTCTGTGGAACTATGCGGCGGTGAGATCTGGAGGATCCGGGCATCCAGGCGGCTTGGGATCTGAAGGGGTGCGCGGTGAGGCCAAGCGGTGGGTGGTGTTTGCTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.78

Weight (kDa)

9.85

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 1 - 40 3.4e-09 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 282
AccBSI CCGCTC 1 cut(s) 183
AccII CGCG 1 cut(s) 267
AclWI GGATC 3 cut(s) 222, 235, 259
AcuI CTGAAG 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 2 cut(s) 64, 94
AjnI CCWGG 1 cut(s) 238
AlwI GGATC 3 cut(s) 222, 235, 259
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 226, 281
BamHI GGATCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 117, 166
BciT130I CCWGG 1 cut(s) 240
BcnI CCSGG 1 cut(s) 232
BglII AGATCT 1 cut(s) 218
BisI GCNGC 7 cut(s) 6, 157, 160, 184, 187, 210, 244
BlsI GCNGC 7 cut(s) 7, 158, 161, 185, 188, 211, 245
Bme1390I CCNGG 2 cut(s) 232, 240
BmiI GGNNCC 2 cut(s) 142, 229
BmrFI CCNGG 2 cut(s) 232, 240
BmsI GCATC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 128, 235
BseLI CCNNNNNNNGG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 282
BsnI GGCC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 3 cut(s) 218, 227, 251
BspANI GGCC 1 cut(s) 275
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 142, 229
BspPI GGATC 3 cut(s) 222, 235, 259
BsrBI CCGCTC 1 cut(s) 183
BssMI GATC 3 cut(s) 218, 227, 251
Bst2UI CCWGG 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 30
BstF5I GGATG 2 cut(s) 128, 235
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 3 cut(s) 221, 230, 254
BstMBI GATC 3 cut(s) 218, 227, 251
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 230, 238
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 3 cut(s) 218, 227, 251
BstYI RGATCY 3 cut(s) 218, 227, 251
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 128, 235
CfoI GCGC 1 cut(s) 267
CviJI RGCY 4 cut(s) 8, 141, 246, 275
CviKI_1 RGCY 4 cut(s) 8, 141, 246, 275
DpnI GATC 3 cut(s) 220, 229, 253
DpnII GATC 3 cut(s) 218, 227, 251
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 143
FaiI YATR 2 cut(s) 148, 207
Fnu4HI GCNGC 7 cut(s) 6, 157, 160, 184, 187, 210, 244
FokI GGATG 2 cut(s) 135, 222
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 7 cut(s) 6, 157, 160, 184, 187, 210, 244
GlaI GCGC 1 cut(s) 266
GluI GCNGC 7 cut(s) 6, 157, 160, 184, 187, 210, 244
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 231
HhaI GCGC 1 cut(s) 267
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 231
HphI GGTGA 2 cut(s) 226, 281
Hpy188I TCNGA 2 cut(s) 171, 256
Hpy188III TCNNGA 3 cut(s) 64, 85, 222
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 19, 34, 251
HspAI GCGC 1 cut(s) 265
Kzo9I GATC 3 cut(s) 218, 227, 251
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 6 cut(s) 117, 207, 225, 244, 252, 282
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 244
MalI GATC 3 cut(s) 220, 229, 253
MbiI CCGCTC 1 cut(s) 183
MboI GATC 3 cut(s) 218, 227, 251
MboII GAAGA 2 cut(s) 47, 52
MflI RGATCY 3 cut(s) 218, 227, 251
MhlI GDGCHC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 3 cut(s) 39, 218, 265
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 232, 240
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 267
NciI CCSGG 1 cut(s) 232
NdeII GATC 3 cut(s) 218, 227, 251
NlaIV GGNNCC 2 cut(s) 142, 229
PfeI GAWTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 282
PkrI GCNGC 7 cut(s) 7, 158, 161, 185, 188, 211, 245
Psp6I CCWGG 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 142, 229
PsuI RGATCY 3 cut(s) 218, 227, 251
SatI GCNGC 7 cut(s) 6, 157, 160, 184, 187, 210, 244
Sau3AI GATC 3 cut(s) 218, 227, 251
ScrFI CCNGG 2 cut(s) 232, 240
SduI GDGCHC 1 cut(s) 143
SfaNI GCATC 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 230, 238
TaqI TCGA 1 cut(s) 12
TauI GCSGC 6 cut(s) 159, 162, 186, 189, 212, 246
TfiI GAWTC 1 cut(s) 106
TseI GCWGC 1 cut(s) 5
Van91I CCANNNNNTGG 1 cut(s) 282
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.