Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003280

Physical Location & Seq

Genomic Coordinates Forward (+)

31738896 .. 31740807

Gene Structure 1912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGTTTTCATCGAAGAAACCTCTTCATTCCCGTTCTGTTCATCATATTGCTGATCGGAACCTCGGCAATCATATTGCTGATCGGAACCTCGGCAATTTCTCAAGTGGCCGCATCCGACGATCAAGAGGATCCGTTCAACGCTTCTCGAGTCTTCGAGGAATGGATGGTGAAGCACAAGCGCGTCTACAAGACCAAGGAAGAGAAAGAAAAGCGTTTTGCCATATTCAAAACCGCGTTCAAGGGTTGGAAGAGGAGCCTTCACAAGTTTTCTGATATGACCCCGGACGAAATCCCCATGGATTGCCGCTATAACCCTGATCTTCTTAAAATGCCCCCTGTTGACGATCAAGAGGATCCGTTCAACGCTTCTCAAGTCTTCGAGGAATGGATGATGAAGTACAAGCGCGTCTACAAGAGCATGGAAGAGAAAGAAAAGCGTTTTGCCATATTCAAAACCGCGTTCAAGGGTTTGAAGAGGAGGCACGACTGGCGGGAATACAAATCGTTTATTGCACACCTTCACATGTTTTCTGATATGACCATGGACGAAATCCCCATGGGTTGCCATAACCCTGAAGATTTGAGGCCCCCTGTACACCTTGTTCACTTTGATTGCTTATATCGTGGGATTACCGCTGTATCTAGCAGGGAATCTAAAATCTTGGCTGGAAATCGTATTATTGCCCAGCCATACGTCTTCAAAGTTGGCGCTACTCCAGGGAAGGAACAAAAGCGAGAGTTTGTGGACAATGCAAATGGTCTATTTTGTGCACAAGCTGCACCAAAACCCCCACGAGCAATGTACTCGGTAACTGAAGGGATGAAAGTAGGGGGGAAGCGAACTGTGATTGTTCCTCCAGAGGCTGGATATGGTCCAAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

295

Amino Acids

34.05

Weight (kDa)

9.31

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	127 - 185	1e-06	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32080
malus_domestica	MD12G1005400.v1.1 MD12G1005800.v1.1 MD12G1005900.v1.1 MD12G1006100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0315921 RchiOBHm_Chr7g0214921
rosa_laevigata	RLG00000002708 RLG00000029343 RLG00000030723
rosa_multiflora	Rmu_co8234753.1_g000001 Rmu_sc0002308.1_g000003 Rmu_sc0002886.1_g000001 Rmu_sc0004614.1_g000001 Rmu_sc0006316.1_g000002 Rmu_sc0007921.1_g000002 Rmu_sc0012813.1_g000001 Rmu_ssc0000134.1_g000025 Rmu_ssc0000154.1_g000024
rosa_roxburghii	Rroxscaffold_3G00244880 Rroxscaffold_4G00315430 Rroxscaffold_4G00331310
rosa_rugosa	Rorug01G0007000 Rorug04G0097100 Rorug07G0148700
rosa_samantha	Rh1AG017800 Rh1AG148200 Rh1DG010800 Rh1DG154900 Rh7AG285500 Rh7AG294300 Rh7BG285900 Rh7CG314300
rosa_wichuraiana	Rw1G001080 Rw1G011970 Rw7G024360 Rw7G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	866
AccI	GTMKAC	2 cut(s)	186, 411
AccII	CGCG	4 cut(s)	183, 236, 408, 461
AciI	CCGC	6 cut(s)	111, 234, 307, 459, 493, 636
AclWI	GGATC	4 cut(s)	125, 138, 350, 363
AcoI	YGGCCR	1 cut(s)	108
AcuI	CTGAAG	2 cut(s)	597, 837
AfaI	GTAC	3 cut(s)	401, 597, 806
AfiI	CCNNNNNNNGG	1 cut(s)	866
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	8 cut(s)	139, 229, 241, 364, 454, 466, 475, 703
AjnI	CCWGG	1 cut(s)	718
AluBI	AGCT	1 cut(s)	779
AluI	AGCT	1 cut(s)	779
Alw21I	GWGCWC	1 cut(s)	775
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	4 cut(s)	125, 138, 350, 363
AlwNI	CAGNNNCTG	1 cut(s)	866
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	108, 587
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	1 cut(s)	779
AspLEI	GCGC	3 cut(s)	183, 408, 713
AspS9I	GGNCC	2 cut(s)	588, 875
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	875
BaeGI	GKGCMC	1 cut(s)	775
BaeI	ACNNNNGTAYC	2 cut(s)	624, 657
BamHI	GGATCC	2 cut(s)	130, 355
BauI	CACGAG	1 cut(s)	795
BbsI	GAAGAC	3 cut(s)	145, 370, 691
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	789, 823
BciT130I	CCWGG	1 cut(s)	720
BcnI	CCSGG	1 cut(s)	284
BfaI	CTAG	1 cut(s)	645
BfoI	RGCGCY	1 cut(s)	714
BisI	GCNGC	3 cut(s)	111, 307, 780
BlsI	GCNGC	3 cut(s)	112, 308, 781
Bme1390I	CCNGG	2 cut(s)	284, 720
Bme18I	GGWCC	1 cut(s)	875
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	588, 875
BmiI	GGNNCC	6 cut(s)	61, 88, 132, 257, 357, 590
BmrFI	CCNGG	2 cut(s)	284, 720
BmsI	GCATC	1 cut(s)	122
BpiI	GAAGAC	3 cut(s)	145, 370, 691
BpmI	CTGGAG	2 cut(s)	702, 843
BpuEI	CTTGAG	2 cut(s)	87, 357
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	8 cut(s)	63, 90, 195, 282, 297, 543, 558, 719
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	8 cut(s)	63, 90, 195, 282, 297, 543, 558, 719
BseGI	GGATG	4 cut(s)	113, 171, 396, 828
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMI	GCAATG	1 cut(s)	807
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	2 cut(s)	268, 493
BseSI	GKGCMC	1 cut(s)	775
BseXI	GCAGC	1 cut(s)	766
BseYI	CCCAGC	1 cut(s)	687
BsgI	GTGCAG	1 cut(s)	765
Bsh1236I	CGCG	4 cut(s)	183, 236, 408, 461
BshFI	GGCC	2 cut(s)	110, 589
BsiHKAI	GWGCWC	1 cut(s)	775
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	866
BsnI	GGCC	2 cut(s)	110, 589
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
Bsp19I	CCATGG	3 cut(s)	297, 543, 558
BspACI	CCGC	6 cut(s)	111, 234, 307, 459, 493, 636
BspANI	GGCC	2 cut(s)	110, 589
BspFNI	CGCG	4 cut(s)	183, 236, 408, 461
BspLI	GGNNCC	6 cut(s)	61, 88, 132, 257, 357, 590
BspPI	GGATC	4 cut(s)	125, 138, 350, 363
BsrDI	GCAATG	1 cut(s)	807
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	8 cut(s)	63, 90, 195, 282, 297, 543, 558, 719
BssMI	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
BssSI	CACGAG	1 cut(s)	795
BssT1I	CCWWGG	4 cut(s)	195, 297, 543, 558
Bst2BI	CACGAG	1 cut(s)	795
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	1 cut(s)	847
Bst6I	CTCTTC	5 cut(s)	29, 195, 245, 420, 470
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstAUI	TGTACA	1 cut(s)	595
BstDSI	CCRYGG	3 cut(s)	297, 543, 558
BstF5I	GGATG	4 cut(s)	113, 171, 396, 828
BstFNI	CGCG	4 cut(s)	183, 236, 408, 461
BstH2I	RGCGCY	1 cut(s)	714
BstHHI	GCGC	3 cut(s)	183, 408, 713
BstKTI	GATC	7 cut(s)	57, 84, 124, 133, 322, 349, 358
BstMBI	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 779
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	282, 718
BstSLI	GKGCMC	1 cut(s)	775
BstUI	CGCG	4 cut(s)	183, 236, 408, 461
BstV1I	GCAGC	1 cut(s)	766
BstV2I	GAAGAC	3 cut(s)	145, 370, 691
BstX2I	RGATCY	2 cut(s)	130, 355
BstYI	RGATCY	2 cut(s)	130, 355
BsuRI	GGCC	2 cut(s)	110, 589
BtgI	CCRYGG	3 cut(s)	297, 543, 558
BtsCI	GGATG	4 cut(s)	113, 171, 396, 828
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	3 cut(s)	183, 408, 713
Cfr13I	GGNCC	2 cut(s)	588, 875
CseI	GACGC	2 cut(s)	172, 397
Csp6I	GTAC	3 cut(s)	400, 596, 805
CviAII	CATG	6 cut(s)	298, 421, 526, 544, 559, 885
CviJI	RGCY	7 cut(s)	110, 258, 589, 668, 691, 779, 866
CviKI_1	RGCY	7 cut(s)	110, 258, 589, 668, 691, 779, 866
CviQI	GTAC	3 cut(s)	400, 596, 805
DpnI	GATC	7 cut(s)	56, 83, 123, 132, 321, 348, 357
DpnII	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	5 cut(s)	29, 195, 245, 420, 470
EarI	CTCTTC	5 cut(s)	29, 195, 245, 420, 470
Eco130I	CCWWGG	4 cut(s)	195, 297, 543, 558
Eco47I	GGWCC	1 cut(s)	875
Eco57I	CTGAAG	2 cut(s)	597, 837
Eco88I	CYCGRG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	4 cut(s)	195, 297, 543, 558
ErhI	CCWWGG	4 cut(s)	195, 297, 543, 558
FaeI	CATG	6 cut(s)	301, 424, 529, 547, 562, 888
FatI	CATG	6 cut(s)	297, 420, 525, 543, 558, 884
FauI	CCCGC	1 cut(s)	486
FblI	GTMKAC	2 cut(s)	186, 411
Fnu4HI	GCNGC	3 cut(s)	111, 307, 780
FokI	GGATG	4 cut(s)	100, 178, 403, 835
Fsp4HI	GCNGC	3 cut(s)	111, 307, 780
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	3 cut(s)	182, 407, 712
GluI	GCNGC	3 cut(s)	111, 307, 780
GsaI	CCCAGC	1 cut(s)	691
GsuI	CTGGAG	2 cut(s)	702, 843
HaeII	RGCGCY	1 cut(s)	714
HaeIII	GGCC	2 cut(s)	110, 589
HapII	CCGG	1 cut(s)	284
HgaI	GACGC	2 cut(s)	172, 397
HhaI	GCGC	3 cut(s)	183, 408, 713
Hin1II	CATG	6 cut(s)	301, 424, 529, 547, 562, 888
Hin6I	GCGC	3 cut(s)	181, 406, 711
HinP1I	GCGC	3 cut(s)	181, 406, 711
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	150, 653
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	7 cut(s)	187, 343, 412, 598, 607, 748, 773
Hpy188I	TCNGA	5 cut(s)	59, 86, 118, 274, 535
Hpy188III	TCNNGA	4 cut(s)	125, 147, 350, 860
Hpy8I	GTNNAC	7 cut(s)	187, 343, 412, 598, 607, 748, 773
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	4 cut(s)	269, 530, 718, 812
HpyCH4III	ACNGT	1 cut(s)	847
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	4 cut(s)	515, 755, 773, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 779
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	6 cut(s)	301, 424, 529, 547, 562, 888
HspAI	GCGC	3 cut(s)	181, 406, 711
Kzo9I	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	7 cut(s)	56, 83, 123, 132, 321, 348, 357
MboI	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
MflI	RGATCY	2 cut(s)	130, 355
MhlI	GDGCHC	1 cut(s)	775
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	2 cut(s)	141, 227
MseI	TTAA	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	284, 720
MvaI	CCWGG	1 cut(s)	720
MvnI	CGCG	4 cut(s)	183, 236, 408, 461
MwoI	GCNNNNNNNGC	2 cut(s)	490, 779
NciI	CCSGG	1 cut(s)	284
NcoI	CCATGG	3 cut(s)	297, 543, 558
NdeII	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
NlaIII	CATG	6 cut(s)	301, 424, 529, 547, 562, 888
NlaIV	GGNNCC	6 cut(s)	61, 88, 132, 257, 357, 590
NmeAIII	GCCGAG	2 cut(s)	44, 71
NspI	RCATGY	1 cut(s)	529
PaeR7I	CTCGAG	1 cut(s)	147
PciI	ACATGT	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	653
PflMI	CCANNNNNTGG	1 cut(s)	866
PkrI	GCNGC	3 cut(s)	112, 308, 781
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PscI	ACATGT	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	718
PspFI	CCCAGC	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	6 cut(s)	61, 88, 132, 257, 357, 590
PspPI	GGNCC	2 cut(s)	588, 875
PsrI	GAACNNNNNNTAC	2 cut(s)	588, 620
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	2 cut(s)	130, 355
RsaI	GTAC	3 cut(s)	401, 597, 806
RsaNI	GTAC	3 cut(s)	400, 596, 805
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	3 cut(s)	111, 307, 780
Sau3AI	GATC	7 cut(s)	54, 81, 121, 130, 319, 346, 355
Sau96I	GGNCC	2 cut(s)	588, 875
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	284, 720
SduI	GDGCHC	1 cut(s)	775
SetI	ASST	7 cut(s)	24, 65, 92, 522, 603, 699, 781
SfaNI	GCATC	1 cut(s)	122
Sfr274I	CTCGAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	875
SlaI	CTCGAG	1 cut(s)	147
SmlI	CTYRAG	3 cut(s)	102, 147, 372
SmoI	CTYRAG	3 cut(s)	102, 147, 372
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	6 cut(s)	111, 234, 307, 459, 493, 636
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	2 cut(s)	282, 718
StyI	CCWWGG	4 cut(s)	195, 297, 543, 558
TaaI	ACNGT	1 cut(s)	847
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	4 cut(s)	13, 148, 156, 381
TasI	AATT	1 cut(s)	96
TatI	WGTACW	3 cut(s)	399, 595, 804
TauI	GCSGC	2 cut(s)	113, 309
TfiI	GAWTC	1 cut(s)	653
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseI	GCWGC	1 cut(s)	779
TspDTI	ATGAA	4 cut(s)	16, 31, 410, 839
TspGWI	ACGGA	2 cut(s)	123, 348
Van91I	CCANNNNNTGG	1 cut(s)	866
VneI	GTGCAC	1 cut(s)	771
VpaK11BI	GGWCC	1 cut(s)	875
XceI	RCATGY	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	147
XmiI	GTMKAC	2 cut(s)	186, 411
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.