RchiOBHm_Chr7g0214921

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003280
Physical Location & Seq
Forward (+)
32340254 .. 32347186
6933 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19229

Sequence Viewer

Length: 522 bp
ATGGGATTTGAGAAAAGAGAGTTTTTCTTATTAGTAGTACTAGTGTTGCTCAACAGTTCGGCAATATCAACAGCTAGCCGTCCACTTTCAACCAATTCTGATGATCTCATCGAAGTGTTTGAGGATTGGGCCCTCGAACACAAACGCGTCTATCCTACTGAAGAAGAGAAACAAAGGCGATTTGAAAACTTCAGAGCAACGTATGAGTTCGTGGACAAATTCTACAAGGAAGGTGGTGAGAGTAAACTCTACACGGTCGGCCTGAACGCATTTGCTGACATGACAAACGAAGAATTCTACGATGCTCATGCTTGCTTTGTAGATCATGCCTACGACGTCGTCTCAAGCTCGACCATGACCTCGTCATCATCTTCTGCTAAGGTTTATGAAAACAAAGAGCAAGAATTATGTGGCGGGGTGGCTGACTGGACTGCTTTGGGAATGATTAACGCTCATACATCTCTCTTTCACTTTGCCGATCTAATTGTTAAGGTCAATTTGTTCAGGGGTCCATACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

173

Amino Acids

19.71

Weight (kDa)

4.84

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 40 - 99 2.1e-15 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 339
AccII CGCG 1 cut(s) 147
AciI CCGC 1 cut(s) 414
AcsI RAATTY 2 cut(s) 218, 293
AcuI CTGAAG 2 cut(s) 175, 180
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 1 cut(s) 39
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 2 cut(s) 90, 185
AhlI ACTAGT 1 cut(s) 40
AluBI AGCT 2 cut(s) 74, 348
AluI AGCT 2 cut(s) 74, 348
Alw26I GTCTC 1 cut(s) 346
AoxI GGCC 2 cut(s) 129, 259
ApaI GGGCCC 1 cut(s) 133
ApoI RAATTY 2 cut(s) 218, 293
AspS9I GGNCC 3 cut(s) 129, 130, 509
AsuHPI GGTGA 1 cut(s) 248
AsuNHI GCTAGC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 509
BaeGI GKGCMC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 63
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BcoDI GTCTC 1 cut(s) 346
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 2 cut(s) 41, 75
BmcAI AGTACT 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 509
BmgT120I GGNCC 3 cut(s) 129, 130, 509
BmiI GGNNCC 2 cut(s) 131, 510
BmsI GCATC 1 cut(s) 292
BmtI GCTAGC 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 2 cut(s) 131, 261
BsiEI CGRYCG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 346
BsmBI CGTCTC 1 cut(s) 346
BsnI GGCC 2 cut(s) 131, 261
Bsp120I GGGCCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 3 cut(s) 103, 322, 478
BspACI CCGC 1 cut(s) 414
BspANI GGCC 2 cut(s) 131, 261
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 131, 510
BspOI GCTAGC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 431
BssMI GATC 3 cut(s) 103, 322, 478
BssNI GRCGYC 1 cut(s) 336
Bst4CI ACNGT 3 cut(s) 56, 256, 518
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 76, 313
BstDEI CTNAG 1 cut(s) 378
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 3 cut(s) 106, 325, 481
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 3 cut(s) 103, 322, 478
BstMCI CGRYCG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 133
BstUI CGCG 1 cut(s) 147
BsuRI GGCC 2 cut(s) 131, 261
Cac8I GCNNGC 2 cut(s) 76, 313
Cfr13I GGNCC 3 cut(s) 129, 130, 509
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 4 cut(s) 280, 308, 326, 355
CviJI RGCY 6 cut(s) 74, 78, 131, 261, 348, 422
CviKI_1 RGCY 6 cut(s) 74, 78, 131, 261, 348, 422
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 378
DpnI GATC 3 cut(s) 105, 324, 480
DpnII GATC 3 cut(s) 103, 322, 478
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 509
Eco57I CTGAAG 2 cut(s) 175, 180
EcoO109I RGGNCCY 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 133
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 4 cut(s) 283, 311, 329, 358
FaiI YATR 9 cut(s) 204, 281, 309, 327, 356, 387, 409, 456, 514
FatI CATG 4 cut(s) 279, 307, 325, 354
FauI CCCGC 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 133
FspBI CTAG 2 cut(s) 41, 75
HaeIII GGCC 2 cut(s) 131, 261
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 4 cut(s) 283, 311, 329, 358
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 3 cut(s) 83, 214, 245
Hpy188I TCNGA 2 cut(s) 100, 194
Hpy8I GTNNAC 3 cut(s) 83, 214, 245
Hpy99I CGWCG 2 cut(s) 338, 341
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 3 cut(s) 56, 256, 518
HpyCH4IV ACGT 2 cut(s) 200, 336
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 2 cut(s) 200, 336
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 4 cut(s) 283, 311, 329, 358
Kzo9I GATC 3 cut(s) 103, 322, 478
LpnPI CCDG 3 cut(s) 275, 412, 490
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 41, 75
MaeII ACGT 2 cut(s) 200, 336
MalI GATC 3 cut(s) 105, 324, 480
MboI GATC 3 cut(s) 103, 322, 478
MboII GAAGA 4 cut(s) 173, 176, 302, 363
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 6 cut(s) 94, 218, 293, 404, 483, 496
MluI ACGCGT 1 cut(s) 145
MnlI CCTC 3 cut(s) 115, 143, 370
MseI TTAA 3 cut(s) 447, 489, 520
MslI CAYNNNNRTG 1 cut(s) 113
MvnI CGCG 1 cut(s) 147
NdeII GATC 3 cut(s) 103, 322, 478
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 4 cut(s) 283, 311, 329, 358
NlaIV GGNNCC 2 cut(s) 131, 510
PflFI GACNNNGTC 2 cut(s) 338, 361
PspN4I GGNNCC 2 cut(s) 131, 510
PspOMI GGGCCC 1 cut(s) 129
PspPI GGNCC 3 cut(s) 129, 130, 509
PsyI GACNNNGTC 2 cut(s) 338, 361
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 3 cut(s) 447, 489, 520
Sau3AI GATC 3 cut(s) 103, 322, 478
Sau96I GGNCC 3 cut(s) 129, 130, 509
ScaI AGTACT 1 cut(s) 39
SduI GDGCHC 1 cut(s) 133
SetI ASST 8 cut(s) 76, 203, 235, 339, 350, 362, 384, 495
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 1 cut(s) 509
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 6 cut(s) 94, 218, 293, 404, 483, 496
SsiI CCGC 1 cut(s) 414
SspMI CTAG 2 cut(s) 41, 75
TaaI ACNGT 3 cut(s) 56, 256, 518
TaiI ACGT 2 cut(s) 203, 339
TaqI TCGA 3 cut(s) 111, 135, 350
TasI AATT 6 cut(s) 94, 218, 293, 404, 483, 496
TatI WGTACW 1 cut(s) 37
Tru1I TTAA 3 cut(s) 447, 489, 520
Tru9I TTAA 3 cut(s) 447, 489, 520
TspDTI ATGAA 1 cut(s) 402
Tth111I GACNNNGTC 2 cut(s) 338, 361
VpaK11BI GGWCC 1 cut(s) 509
XapI RAATTY 2 cut(s) 218, 293
XspI CTAG 2 cut(s) 41, 75
ZraI GACGTC 1 cut(s) 337
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.