RchiOBHm_Chr1g0341661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004253
Physical Location & Seq
Forward (+)
33407618 .. 33417614
9997 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56834

Sequence Viewer

Length: 210 bp
ATGGATGAAGATGGTGGGAATGCAGCTATGCTGACTCAAGTCTCTGTTTGGAAAAAAAGAAATGGACTCGAGCGTGTGCACATAAAATTGGAAGGAGTATTGAAAGTCGGAAACGAAACTAAGTTTGTGCGAGCACTCCAATTCCAGCGGTTATTCCTGCAGGTGAGGACCACCAGGGCTGAGTACGAGGGCGCGGTTGCAGCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.77

Weight (kDa)

9.69

Isoelectric Point (pI)

19.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 151
Acc36I ACCTGC 1 cut(s) 151
AccII CGCG 1 cut(s) 194
AciI CCGC 2 cut(s) 148, 194
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw21I GWGCWC 2 cut(s) 81, 136
Alw26I GTCTC 1 cut(s) 46
Alw44I GTGCAC 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 68
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 23, 200
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 168
BaeGI GKGCMC 1 cut(s) 81
Bbv12I GWGCWC 2 cut(s) 81, 136
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 2 cut(s) 24, 201
BlsI GCNGC 2 cut(s) 25, 202
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 175
BoxI GACNNNNGTC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 194
BsiHKAI GWGCWC 2 cut(s) 81, 136
BsiHKCI CYCGRG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 25
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 81, 136
BspACI CCGC 2 cut(s) 148, 194
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 194
BspMAI CTGCAG 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 120, 180
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 175
BstPAI GACNNNNGTC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 158
BstSLI GKGCMC 1 cut(s) 81
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 184
CviJI RGCY 2 cut(s) 26, 179
CviKI_1 RGCY 2 cut(s) 26, 179
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 120, 180
Eco47I GGWCC 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 173
FaiI YATR 2 cut(s) 29, 83
Fnu4HI GCNGC 2 cut(s) 24, 201
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 24, 201
GlaI GCGC 1 cut(s) 193
GluI GCNGC 2 cut(s) 24, 201
HhaI GCGC 1 cut(s) 194
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 2 cut(s) 34, 66
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 86
HpyCH4V TGCA 4 cut(s) 23, 79, 160, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 120, 180
HspAI GCGC 1 cut(s) 192
LpnPI CCDG 5 cut(s) 146, 158, 160, 170, 187
Lsp1109I GCAGC 1 cut(s) 35
MboII GAAGA 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 81, 136
MluCI AATT 2 cut(s) 86, 140
MlyI GAGTC 2 cut(s) 28, 60
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 2 cut(s) 159, 181
MspA1I CMGCKG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 175
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 68
PaqCI CACCTGC 1 cut(s) 151
PctI GAATGC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 25, 202
PleI GAGTC 2 cut(s) 28, 60
PpsI GAGTC 2 cut(s) 28, 60
PshAI GACNNNNGTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspPI GGNCC 1 cut(s) 168
PspXI VCTCGAGB 1 cut(s) 68
PstI CTGCAG 1 cut(s) 162
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SatI GCNGC 2 cut(s) 24, 201
Sau96I GGNCC 1 cut(s) 168
SbfI CCTGCAGG 1 cut(s) 162
SchI GAGTC 2 cut(s) 28, 60
ScrFI CCNGG 1 cut(s) 175
SdaI CCTGCAGG 1 cut(s) 162
SduI GDGCHC 2 cut(s) 81, 136
SetI ASST 2 cut(s) 28, 165
SfcI CTRYAG 1 cut(s) 158
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 168
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 36, 68
SmoI CTYRAG 2 cut(s) 36, 68
Sse8387I CCTGCAGG 1 cut(s) 162
Sse9I AATT 2 cut(s) 86, 140
SsiI CCGC 2 cut(s) 148, 194
StyD4I CCNGG 1 cut(s) 173
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 86, 140
TscAI CASTG 1 cut(s) 210
TseI GCWGC 2 cut(s) 23, 200
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 168
XhoI CTCGAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.