RchiOBHm_Chr3g0485461

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
32217630 .. 32217943
314 bp
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UTR
Exon/CDS
Intron
PRQ45007

Sequence Viewer

Length: 177 bp
ATGGTTGGGTCGGCCCCTATTGGGCATGCGAGGACGAAAGCTCACCCATACTATAGTGTGCAGGTTTCGAGCATGTGGTCGGGAAGCGTACAGGGGAGGCACATGGCCCGGCTTGGCGCATTTCTCTTTAGTTTTATCAAAAGGAAGGTTTTGGTCCCTTATCGGATTTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.52

Weight (kDa)

11.51

Isoelectric Point (pI)

22.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AoxI GGCC 2 cut(s) 12, 105
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 3 cut(s) 13, 106, 154
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 154
BcnI CCSGG 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 52
BfuAI ACCTGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 13, 106, 154
BmiI GGNNCC 2 cut(s) 15, 156
BmrFI CCNGG 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 2 cut(s) 14, 107
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 14, 107
BspANI GGCC 2 cut(s) 14, 107
BspLI GGNNCC 2 cut(s) 15, 156
BspMI ACCTGC 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 27
BstHHI GCGC 1 cut(s) 119
BstNSI RCATGY 2 cut(s) 29, 76
BstSCI CCNGG 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 52
BsuRI GGCC 2 cut(s) 14, 107
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 3 cut(s) 13, 106, 154
Csp6I GTAC 1 cut(s) 89
CviAII CATG 3 cut(s) 26, 73, 103
CviJI RGCY 4 cut(s) 14, 41, 107, 112
CviKI_1 RGCY 4 cut(s) 14, 41, 107, 112
CviQI GTAC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 154
FaeI CATG 3 cut(s) 29, 76, 106
FaiI YATR 5 cut(s) 27, 49, 54, 74, 104
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 25, 72, 102
GlaI GCGC 1 cut(s) 118
HaeIII GGCC 2 cut(s) 14, 107
HapII CCGG 1 cut(s) 109
HhaI GCGC 1 cut(s) 119
Hin1II CATG 3 cut(s) 29, 76, 106
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HpaII CCGG 1 cut(s) 109
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 61
Hsp92II CATG 3 cut(s) 29, 76, 106
HspAI GCGC 1 cut(s) 117
LpnPI CCDG 3 cut(s) 47, 77, 122
MnlI CCTC 2 cut(s) 24, 90
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 109
NciI CCSGG 1 cut(s) 109
NlaIII CATG 3 cut(s) 29, 76, 106
NlaIV GGNNCC 2 cut(s) 15, 156
NspI RCATGY 2 cut(s) 29, 76
PaeI GCATGC 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 15, 156
PspPI GGNCC 3 cut(s) 13, 106, 154
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
Sau96I GGNCC 3 cut(s) 13, 106, 154
ScrFI CCNGG 1 cut(s) 109
SetI ASST 3 cut(s) 43, 66, 150
SfcI CTRYAG 1 cut(s) 52
SinI GGWCC 1 cut(s) 154
SphI GCATGC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 107
TaqI TCGA 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 154
XceI RCATGY 2 cut(s) 29, 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.