Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004253

Physical Location & Seq

Genomic Coordinates Reverse (-)

81000857 .. 81026696

Gene Structure 25840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG593000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 316 bp

ATGTCTGTAGATTTGGTGCTATCCTATGCAATGAATTCTAGTATTTTCATATTTTGGTCATTGATGCTGCCTTTGGTCTGCTACAAGGATTTGCAAGTTAAGTCTCCCACACCTGCAGAAAGAGAAGAACAGATTCACAATGATGATCCTGCCATTATACAGCTCAAATCAAGGCTATGGGTTTGGCAAGGATTTTTGGTGAACAAGGCCAAGGAGAAGGTATATGACGTGATTTTTGAAGAAGAAAGGGAAACACGATCGTTAAGGAAGTTTAAGCGGGAAGCATCAGAGTGTGGAATACGCCGGCATATTCCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0000956 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010603 GO:0010605 GO:0010606 GO:0010608 GO:0010629 GO:0010638 GO:0016070 GO:0016071 GO:0017148 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031334 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575 GO:1902115 GO:1902117 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FDF LSM14

Protein Analysis

105

Amino Acids

12.44

Weight (kDa)

7.78

Isoelectric Point (pI)

72.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004253)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341661 RchiOBHm_Chr3g0485461 RchiOBHm_Chr3g0496711 RchiOBHm_Chr3g0497561 RchiOBHm_Chr4g0399861 RchiOBHm_Chr5g0049551 RchiOBHm_Chr5g0056221 RchiOBHm_Chr5g0079661 RchiOBHm_Chr6g0245421 RchiOBHm_Chr6g0251521 RchiOBHm_Chr6g0271331 RchiOBHm_Chr6g0273341 RchiOBHm_Chr7g0183411 RchiOBHm_Chr7g0207781 RchiOBHm_Chr7g0234061
rosa_laevigata	RLG00000019701
rosa_multiflora	Rmu_sc0002986.1_g000038
rosa_roxburghii	Rroxscaffold_176G00431310 Rroxscaffold_1G00025630 Rroxscaffold_1G00032450 Rroxscaffold_3G00218140 Rroxscaffold_4G00319190 Rroxscaffold_5G00364950 Rroxscaffold_5G00372490 Rroxscaffold_6G00405160 Rroxscaffold_7G00163910
rosa_rugosa	Rorug05G0249500 Rorug05G0555600 Rorug06G0344700
rosa_samantha	Rh2BG593000 Rh4DG246600
rosa_wichuraiana	Rw0G005310 Rw1G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	121
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	239
AjiI	CACGTC	1 cut(s)	229
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
Asp700I	GAANNNNTTC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	2 cut(s)	6, 114
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BmgBI	CACGTC	1 cut(s)	229
BmsI	GCATC	2 cut(s)	54, 293
BsaJI	CCNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	145, 257
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	145, 257
BssT1I	CCWWGG	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	305
BstKTI	GATC	2 cut(s)	148, 260
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	145, 257
BstMCI	CGRYCG	1 cut(s)	260
BstSFI	CTRYAG	2 cut(s)	6, 114
BstV1I	GCAGC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	303
CviJI	RGCY	3 cut(s)	163, 175, 209
CviKI_1	RGCY	3 cut(s)	163, 175, 209
DpnI	GATC	2 cut(s)	147, 259
DpnII	GATC	2 cut(s)	145, 257
Eco130I	CCWWGG	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaiI	YATR	7 cut(s)	27, 50, 158, 178, 223, 225, 309
FauI	CCCGC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	304
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	29, 94, 116
HpySE526I	ACGT	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	303
KroNI	GCCGGC	1 cut(s)	305
Kzo9I	GATC	2 cut(s)	145, 257
LpnPI	CCDG	2 cut(s)	126, 162
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	2 cut(s)	54, 293
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	228
MalI	GATC	2 cut(s)	147, 259
MboI	GATC	2 cut(s)	145, 257
MboII	GAAGA	3 cut(s)	137, 251, 254
MluCI	AATT	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	3 cut(s)	99, 263, 273
MslI	CAYNNNNRTG	2 cut(s)	141, 289
MspI	CCGG	1 cut(s)	304
NaeI	GCCGGC	1 cut(s)	305
NdeII	GATC	2 cut(s)	145, 257
NgoMIV	GCCGGC	1 cut(s)	303
PaqCI	CACCTGC	1 cut(s)	121
PdiI	GCCGGC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	69
Ple19I	CGATCG	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	118
PvuI	CGATCG	1 cut(s)	260
RseI	CAYNNNNRTG	2 cut(s)	141, 289
SaqAI	TTAA	3 cut(s)	99, 263, 273
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	2 cut(s)	145, 257
SetI	ASST	4 cut(s)	115, 165, 222, 231
SfaNI	GCATC	2 cut(s)	54, 293
SfcI	CTRYAG	2 cut(s)	6, 114
SmiMI	CAYNNNNRTG	2 cut(s)	141, 289
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	1 cut(s)	231
TasI	AATT	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	99, 263, 273
Tru9I	TTAA	3 cut(s)	99, 263, 273
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	37, 47
XapI	RAATTY	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.