Rroxscaffold_1G00025630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004253
Physical Location & Seq
Forward (+)
32142125 .. 32144679
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025630.1

Sequence Viewer

Length: 507 bp
ATGTCTTCCCGCAACCCACGAGCTTCCCGCTCATGCCTTCCCGCAACCATTCGATTCCCGCTCATGCCTTCCCGCAACCCACGAGCTTGCCGCTCATGCCTTCCCGCAACCATTGAGCTTCCCGCTCATGCCTTCCCGCAACCCACGAGCTTCCCGCTCATGCCTTCCCAAAGACCCCCAAGCTTCCGTTCATGCCTTCCCGGCACCCCGAGCTTACCGCTCATGCCTTCCCGCACCCCGAGCTTCCGCTCATGCCTTCCGAGCAACCCTCGAGCTTCGGCTCACGAGGATCCCACGGTGTCGATAACCGTGAACCTCCGAGAGGGGTCGTGCTCCTATGTTTGTCGAGGAAAGGTAAGTACGGACGGTGAACCGGTCATAGGAGACTCGAGCCAGGAAATGGACACTTTCGCTACTTGTAGTCACAAGAACTACAAAGTAGTTGGCTGGTTCTCGAATGATGACGAACCAGGTCGGTCACCGATTTATTTCTCGTTTAGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.45

Weight (kDa)

9.24

Isoelectric Point (pI)

97.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 400
AccBSI CCGCTC 7 cut(s) 30, 61, 93, 125, 157, 220, 249
AclWI GGATC 2 cut(s) 284, 297
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 3 cut(s) 322, 380, 400
AgeI ACCGGT 1 cut(s) 373
AjnI CCWGG 2 cut(s) 393, 469
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 8 cut(s) 23, 86, 118, 150, 183, 213, 243, 275
AluI AGCT 8 cut(s) 23, 86, 118, 150, 183, 213, 243, 275
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 2 cut(s) 284, 297
Ama87I CYCGRG 4 cut(s) 208, 238, 270, 388
AsiGI ACCGGT 1 cut(s) 373
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 380, 471
AvaI CYCGRG 4 cut(s) 208, 238, 270, 388
BamHI GGATCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 203
BauI CACGAG 4 cut(s) 18, 81, 145, 284
Bbv12I GWGCWC 1 cut(s) 335
BciT130I CCWGG 2 cut(s) 395, 471
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 378
BglI GCCNNNNNGGC 1 cut(s) 201
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 3 cut(s) 201, 395, 471
BmeT110I CYCGRG 4 cut(s) 208, 238, 270, 388
BmiI GGNNCC 2 cut(s) 205, 291
BmrFI CCNGG 3 cut(s) 201, 395, 471
BplI GAGNNNNNCTC 2 cut(s) 253, 285
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 373
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 380, 400
Bse118I RCCGGY 2 cut(s) 373, 501
BseBI CCWGG 2 cut(s) 395, 471
BseDI CCNNGG 1 cut(s) 294
BseLI CCNNNNNNNGG 3 cut(s) 322, 380, 400
BshNI GGYRCC 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 4 cut(s) 208, 238, 270, 388
BsiSI CCGG 3 cut(s) 201, 374, 502
BslI CCNNNNNNNGG 3 cut(s) 322, 380, 400
BsmAI GTCTC 1 cut(s) 378
BsoBI CYCGRG 4 cut(s) 208, 238, 270, 388
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 205, 291
BspPI GGATC 2 cut(s) 284, 297
BspT107I GGYRCC 1 cut(s) 203
BsrBI CCGCTC 7 cut(s) 30, 61, 93, 125, 157, 220, 249
BsrFI RCCGGY 2 cut(s) 373, 501
BssAI RCCGGY 2 cut(s) 373, 501
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 1 cut(s) 289
BssSI CACGAG 4 cut(s) 18, 81, 145, 284
Bst2BI CACGAG 4 cut(s) 18, 81, 145, 284
Bst2UI CCWGG 2 cut(s) 395, 471
Bst4CI ACNGT 3 cut(s) 298, 310, 368
BstC8I GCNNGC 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 294
BstEII GGTNACC 1 cut(s) 477
BstENI CCTNNNNNAGG 1 cut(s) 320
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 5 cut(s) 96, 201, 210, 240, 261
BstNI CCWGG 2 cut(s) 395, 471
BstPI GGTNACC 1 cut(s) 477
BstSCI CCNGG 3 cut(s) 199, 393, 469
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BtgI CCRYGG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 88
Cfr10I RCCGGY 2 cut(s) 373, 501
CsiI ACCWGGT 1 cut(s) 469
Csp6I GTAC 1 cut(s) 360
CspAI ACCGGT 1 cut(s) 373
CviAII CATG 8 cut(s) 33, 64, 96, 128, 160, 192, 223, 252
CviQI GTAC 1 cut(s) 360
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eco88I CYCGRG 4 cut(s) 208, 238, 270, 388
Eco91I GGTNACC 1 cut(s) 477
EcoNI CCTNNNNNAGG 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 393, 469
FaeI CATG 8 cut(s) 36, 67, 99, 131, 163, 195, 226, 255
FatI CATG 8 cut(s) 32, 63, 95, 127, 159, 191, 222, 251
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
HapII CCGG 3 cut(s) 201, 374, 502
Hin1II CATG 8 cut(s) 36, 67, 99, 131, 163, 195, 226, 255
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 2 cut(s) 54, 386
HpaII CCGG 3 cut(s) 201, 374, 502
HphI GGTGA 2 cut(s) 380, 471
Hpy166II GTNNAC 2 cut(s) 313, 371
Hpy188I TCNGA 2 cut(s) 261, 320
Hpy188III TCNNGA 2 cut(s) 284, 454
Hpy8I GTNNAC 2 cut(s) 313, 371
HpyAV CCTTC 8 cut(s) 47, 78, 110, 142, 174, 206, 237, 266
HpyCH4III ACNGT 3 cut(s) 298, 310, 368
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 201, 210, 240, 261
Hsp92II CATG 8 cut(s) 36, 67, 99, 131, 163, 195, 226, 255
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 7 cut(s) 214, 380, 387, 407, 433, 456, 483
MabI ACCWGGT 1 cut(s) 469
MaeIII GTNAC 2 cut(s) 422, 477
MalI GATC 1 cut(s) 291
MbiI CCGCTC 7 cut(s) 30, 61, 93, 125, 157, 220, 249
MboI GATC 1 cut(s) 289
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 335
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 5 cut(s) 279, 280, 316, 326, 341
MspI CCGG 3 cut(s) 201, 374, 502
MspR9I CCNGG 3 cut(s) 201, 395, 471
MvaI CCWGG 2 cut(s) 395, 471
MwoI GCNNNNNNNGC 5 cut(s) 96, 201, 210, 240, 261
NciI CCSGG 1 cut(s) 201
NdeII GATC 1 cut(s) 289
NlaIII CATG 8 cut(s) 36, 67, 99, 131, 163, 195, 226, 255
NlaIV GGNNCC 2 cut(s) 205, 291
NmuCI GTSAC 2 cut(s) 422, 477
PaeR7I CTCGAG 2 cut(s) 270, 388
PfeI GAWTC 1 cut(s) 54
PflMI CCANNNNNTGG 1 cut(s) 400
PinAI ACCGGT 1 cut(s) 373
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Psp6I CCWGG 2 cut(s) 393, 469
PspEI GGTNACC 1 cut(s) 477
PspGI CCWGG 2 cut(s) 393, 469
PspN4I GGNNCC 2 cut(s) 205, 291
PspXI VCTCGAGB 2 cut(s) 270, 388
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 1 cut(s) 289
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 3 cut(s) 201, 395, 471
SduI GDGCHC 1 cut(s) 335
SexAI ACCWGGT 1 cut(s) 469
Sfr274I CTCGAG 2 cut(s) 270, 388
SlaI CTCGAG 2 cut(s) 270, 388
SmlI CTYRAG 2 cut(s) 270, 388
SmoI CTYRAG 2 cut(s) 270, 388
StyD4I CCNGG 3 cut(s) 199, 393, 469
TaaI ACNGT 3 cut(s) 298, 310, 368
TaqI TCGA 6 cut(s) 52, 271, 302, 346, 389, 455
TaqII GACCGA 1 cut(s) 465
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 54
TseFI GTSAC 2 cut(s) 422, 477
Tsp45I GTSAC 2 cut(s) 422, 477
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 2 cut(s) 176, 377
Van91I CCANNNNNTGG 1 cut(s) 400
XagI CCTNNNNNAGG 1 cut(s) 320
XhoI CTCGAG 2 cut(s) 270, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.