RchiOBHm_Chr3g0497561

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
49602384 .. 49605558
3175 bp
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UTR
Exon/CDS
Intron
PRQ45973

Sequence Viewer

Length: 123 bp
ATGATTTTTGAAGAAGAAAGGGAAACACGATCGTTAAGGAAGCTTAAGCGGAAAGCATCAGAGTGTGGAGTACGCCAGCATTTTCCAGGTTATAACAAGGTCATTCCGGACGATTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

40

Amino Acids

4.79

Weight (kDa)

7.93

Isoelectric Point (pI)

67.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 1 cut(s) 49
AfaI GTAC 1 cut(s) 72
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 11
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 87
BfrI CTTAAG 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 32
BsiSI CCGG 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 29
BspACI CCGC 1 cut(s) 49
BspEI TCCGGA 1 cut(s) 106
BspTI CTTAAG 1 cut(s) 44
BssMI GATC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 77
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstMCI CGRYCG 1 cut(s) 32
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 71
CviJI RGCY 1 cut(s) 43
CviKI_1 RGCY 1 cut(s) 43
CviQI GTAC 1 cut(s) 71
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 85
FaiI YATR 1 cut(s) 93
HapII CCGG 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 41
HpaII CCGG 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 107
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 29
LpnPI CCDG 3 cut(s) 72, 89, 99
LweI GCATC 1 cut(s) 65
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 2 cut(s) 23, 26
MroI TCCGGA 1 cut(s) 106
MseI TTAA 2 cut(s) 35, 45
MslI CAYNNNNRTG 1 cut(s) 61
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
NdeII GATC 1 cut(s) 29
Ple19I CGATCG 1 cut(s) 32
PsiI TTATAA 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PvuI CGATCG 1 cut(s) 32
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 61
SaqAI TTAA 2 cut(s) 35, 45
Sau3AI GATC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 87
SetI ASST 3 cut(s) 45, 91, 102
SfaNI GCATC 1 cut(s) 65
SgeI CNNG 6 cut(s) 39, 88, 98, 99, 109, 119
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 85
Tru1I TTAA 2 cut(s) 35, 45
Tru9I TTAA 2 cut(s) 35, 45
Vha464I CTTAAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.