Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004253

Physical Location & Seq

Genomic Coordinates Reverse (-)

46414098 .. 46428515

Gene Structure 14418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCTCTTGTACGCTGGCCTCCTAGAACTTTCTTTGCGTATTCGATTAGTTTCGAGGATGTGGTCGGGGAGCATATAGAGGAGGCACATGCCTGGCTTGGCGACATAGCTGCCTTTCTGAACTATATTCAGGTGGAAAAAGTGAAGGAGTTGCTCGGACAAGGTGTGTCCCGAAGTAGATATCATGAGACAACTCCTGAACAGTTCAAGAGGCAGCTCAGAGAGCCCAAGGGGGAGAATGTCACTCTTGGACCTGCTATCCGTGATGGAGAGTATTACATAGGAGAGTTCTATACTGCTCTGGCATATTTCTGCTCAAGAAATAATGTTTCAGAGCTGATATCTCTGGAGGATTATCCGCTTGAAGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

124

Amino Acids

14.34

Weight (kDa)

4.84

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004253)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341661 RchiOBHm_Chr3g0485461 RchiOBHm_Chr3g0496711 RchiOBHm_Chr3g0497561 RchiOBHm_Chr4g0399861 RchiOBHm_Chr5g0049551 RchiOBHm_Chr5g0056221 RchiOBHm_Chr5g0079661 RchiOBHm_Chr6g0245421 RchiOBHm_Chr6g0251521 RchiOBHm_Chr6g0271331 RchiOBHm_Chr6g0273341 RchiOBHm_Chr7g0183411 RchiOBHm_Chr7g0207781 RchiOBHm_Chr7g0234061
rosa_laevigata	RLG00000019701
rosa_multiflora	Rmu_sc0002986.1_g000038
rosa_roxburghii	Rroxscaffold_176G00431310 Rroxscaffold_1G00025630 Rroxscaffold_1G00032450 Rroxscaffold_3G00218140 Rroxscaffold_4G00319190 Rroxscaffold_5G00364950 Rroxscaffold_5G00372490 Rroxscaffold_6G00405160 Rroxscaffold_7G00163910
rosa_rugosa	Rorug05G0249500 Rorug05G0555600 Rorug06G0344700
rosa_samantha	Rh2BG593000 Rh4DG246600
rosa_wichuraiana	Rw0G005310 Rw1G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AciI	CCGC	1 cut(s)	359
AfaI	GTAC	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	208, 365
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	3 cut(s)	110, 217, 337
AluI	AGCT	3 cut(s)	110, 217, 337
Alw26I	GTCTC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	110, 214
AspS9I	GGNCC	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	97, 226
BccI	CCATC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	2 cut(s)	111, 215
BlsI	GCNGC	2 cut(s)	112, 216
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	97, 226
BshFI	GGCC	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	228
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	97, 226
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	64
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	17
CciI	TCATGA	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	89, 185
CviJI	RGCY	7 cut(s)	5, 19, 97, 110, 217, 226, 337
CviKI_1	RGCY	7 cut(s)	5, 19, 97, 110, 217, 226, 337
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	228
Eco32I	GATATC	2 cut(s)	182, 342
Eco47I	GGWCC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	92
EcoRV	GATATC	2 cut(s)	182, 342
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	92, 188
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	88, 184
Fnu4HI	GCNGC	2 cut(s)	111, 215
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	111, 215
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	2 cut(s)	111, 215
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	92, 188
HinfI	GANTC	1 cut(s)	368
Hpy188I	TCNGA	4 cut(s)	120, 158, 221, 334
Hpy188III	TCNNGA	6 cut(s)	171, 185, 197, 208, 318, 347
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	92, 188
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	79, 106, 116, 210, 267, 287, 332
Lsp1109I	GCAGC	2 cut(s)	97, 226
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	228
MnlI	CCTC	6 cut(s)	30, 49, 73, 76, 204, 343
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	223
NlaIII	CATG	2 cut(s)	92, 188
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	92
PagI	TCATGA	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	112, 216
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SatI	GCNGC	2 cut(s)	111, 215
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	6 cut(s)	112, 135, 166, 219, 256, 339
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	44, 54
TfiI	GAWTC	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	110, 214
Tsp45I	GTSAC	1 cut(s)	241
TspGWI	ACGGA	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	251
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.