Rroxscaffold_5G00372490

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
53926485 .. 53935881
9397 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00372490.1

Sequence Viewer

Length: 393 bp
ATGGAAAATGCGAATTACTTGGGAGATGACGAAGCTAAGGCAAGGGAGCATGAGAACGCGAGGAATGTCGATGGTGGAACACCAAGAAATGCTGACGACACTCGATCTACACCAAGAATAGCACCGAACTTGGAAGAAACAATGGGATTACGAGGAAAAAGGGGCAGTTTCGGTCATGTCGTCGATGAGTTAAAGAGGATGATAAAGAAACAAGAATTGCAAGATGCGGACATGAGCGTGTGCACTTGGATTCGGACAAATGATCGAAAGTCGGGAACGAACCCGAATGTGGACGAGCACTCCAATTTCAGGATGGTGGATGATTTTAGCGATGAGTTTGAGAAGTTGGGAAGGCTGGAGATGACGAAGTTCATTGGGGCGATGAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.86

Weight (kDa)

5.66

Isoelectric Point (pI)

20.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 59
AciI CCGC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 289, 309
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw21I GWGCWC 2 cut(s) 245, 300
Alw44I GTGCAC 1 cut(s) 241
ApaLI GTGCAC 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 245, 300
BccI CCATC 2 cut(s) 65, 307
BmsI GCATC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 309
BseGI GGATG 3 cut(s) 204, 318, 325
BseLI CCNNNNNNNGG 2 cut(s) 289, 309
BseSI GKGCMC 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 59
BsiHKAI GWGCWC 2 cut(s) 245, 300
BslI CCNNNNNNNGG 2 cut(s) 289, 309
Bsp1286I GDGCHC 2 cut(s) 245, 300
Bsp143I GATC 2 cut(s) 104, 262
BspACI CCGC 1 cut(s) 227
BspFNI CGCG 1 cut(s) 59
BssMI GATC 2 cut(s) 104, 262
Bst6I CTCTTC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 204, 318, 325
BstFNI CGCG 1 cut(s) 59
BstKTI GATC 2 cut(s) 107, 265
BstMBI GATC 2 cut(s) 104, 262
BstSLI GKGCMC 1 cut(s) 245
BstUI CGCG 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 345
BtsCI GGATG 3 cut(s) 204, 318, 325
CviAII CATG 3 cut(s) 50, 176, 232
CviJI RGCY 2 cut(s) 35, 355
CviKI_1 RGCY 2 cut(s) 35, 355
DdeI CTNAG 1 cut(s) 36
DpnI GATC 2 cut(s) 106, 264
DpnII GATC 2 cut(s) 104, 262
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
FaeI CATG 3 cut(s) 53, 179, 235
FaiI YATR 3 cut(s) 51, 177, 233
FatI CATG 3 cut(s) 49, 175, 231
FokI GGATG 3 cut(s) 211, 325, 332
GsuI CTGGAG 1 cut(s) 377
Hin1II CATG 3 cut(s) 53, 179, 235
HinfI GANTC 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 243, 292
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 2 cut(s) 273, 310
Hpy8I GTNNAC 2 cut(s) 243, 292
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 345
HpyCH4V TGCA 2 cut(s) 220, 243
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 3 cut(s) 53, 179, 235
Kzo9I GATC 2 cut(s) 104, 262
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 2 cut(s) 295, 341
LweI GCATC 1 cut(s) 214
MalI GATC 2 cut(s) 106, 264
MboI GATC 2 cut(s) 104, 262
MboII GAAGA 1 cut(s) 146
MhlI GDGCHC 2 cut(s) 245, 300
MluCI AATT 3 cut(s) 13, 215, 304
MnlI CCTC 4 cut(s) 54, 146, 189, 381
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 236
MvnI CGCG 1 cut(s) 59
NdeII GATC 2 cut(s) 104, 262
NlaIII CATG 3 cut(s) 53, 179, 235
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 1 cut(s) 191
Sau3AI GATC 2 cut(s) 104, 262
SduI GDGCHC 2 cut(s) 245, 300
SetI ASST 2 cut(s) 37, 392
SfaNI GCATC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 3 cut(s) 13, 215, 304
SsiI CCGC 1 cut(s) 227
TaqI TCGA 4 cut(s) 69, 103, 183, 265
TaqII GACCGA 1 cut(s) 161
TasI AATT 3 cut(s) 13, 215, 304
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 361
VneI GTGCAC 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.