RchiOBHm_Chr3g0496711

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
47921566 .. 47931452
9887 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45901

Sequence Viewer

Length: 261 bp
ATGGAATTGGATGAAGTATCCAATGTCAGAGACAAAACTAAGTTTGGGCGAGCACTCCATATCCAGTGTGCAGGTTTCGAGTATGTGGTCGGGGAGCGTACAGAGGAGGGAGGCATATGGCCCGACTTGGCACATTCTTCTTTAGTTTTATTAGACGAGAGTTTTGGTCTCTTATCGGATTTTGAAGTAACCTATTTATTTACTTTCTATTTAATTATTTGTTTTCTACTCCCTTATTTACAAATTTCGAGAGACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.88

Weight (kDa)

4.42

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 243
AfaI GTAC 1 cut(s) 100
AgsI TTSAA 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 3 cut(s) 24, 173, 246
AoxI GGCC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 243
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspS9I GGNCC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 55
BciVI GTATCC 1 cut(s) 28
BcoDI GTCTC 3 cut(s) 24, 173, 246
BfuAI ACCTGC 1 cut(s) 62
BfuI GTATCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 120
BsaI GGTCTC 2 cut(s) 173, 246
Bse1I ACTGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 55
BsmAI GTCTC 3 cut(s) 24, 173, 246
BsnI GGCC 1 cut(s) 121
Bso31I GGTCTC 2 cut(s) 173, 246
Bsp1286I GDGCHC 1 cut(s) 55
BspANI GGCC 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 62
BspTNI GGTCTC 2 cut(s) 173, 246
BsrI ACTGG 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 16
BstMAI GTCTC 3 cut(s) 24, 173, 246
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 71
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 99
CviJI RGCY 1 cut(s) 121
CviKI_1 RGCY 1 cut(s) 121
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 39
Eco31I GGTCTC 2 cut(s) 173, 246
FaiI YATR 5 cut(s) 60, 84, 116, 118, 259
FauNDI CATATG 1 cut(s) 116
FokI GGATG 1 cut(s) 23
HaeIII GGCC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 29, 178
Hpy188III TCNNGA 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 39
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 57, 77
MaeIII GTNAC 1 cut(s) 187
MboII GAAGA 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 3 cut(s) 5, 213, 243
MnlI CCTC 3 cut(s) 97, 100, 104
MseI TTAA 1 cut(s) 212
NdeI CATATG 1 cut(s) 116
PspPI GGNCC 1 cut(s) 120
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 55
SetI ASST 2 cut(s) 76, 194
SgeI CNNG 8 cut(s) 62, 76, 84, 91, 103, 134, 139, 169
Sse9I AATT 3 cut(s) 5, 213, 243
TaqI TCGA 2 cut(s) 78, 248
TasI AATT 3 cut(s) 5, 213, 243
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 1 cut(s) 71
XapI RAATTY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.