Rroxscaffold_176G00431310

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
Physical Location & Seq
Forward (+)
912042 .. 914238
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431310.1

Sequence Viewer

Length: 243 bp
ATGGACACTTTCGCTACTTGTAGTCACAAGGACTACGTAGTAGTTGGCCGGTTCTCGAAGGATGACCAACCGGGTTGGTCACCGATTTGTTTTAGTTTAGCCGGCAGTGACGGGAGTGTCGAAGAGATGCACACCTACACGCAAAACCAATCAATATTAGCCACGTGGGACAACATTATCGAGGTAACGCTTATCTCGTTTCAACTCAAAAATTTGAATTTCAAACAAGCAAGTATCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.01

Weight (kDa)

5.0

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 211, 217
AcvI CACGTG 1 cut(s) 165
AgsI TTSAA 3 cut(s) 203, 217, 223
AoxI GGCC 1 cut(s) 46
ApoI RAATTY 2 cut(s) 211, 217
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 72
BbrPI CACGTG 1 cut(s) 165
BcnI CCSGG 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 72
BsaAI YACGTR 2 cut(s) 37, 165
Bse118I RCCGGY 2 cut(s) 48, 101
BseGI GGATG 1 cut(s) 67
BshFI GGCC 1 cut(s) 48
BsiSI CCGG 3 cut(s) 49, 71, 102
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 48
BspANI GGCC 1 cut(s) 48
BsrFI RCCGGY 2 cut(s) 48, 101
BssAI RCCGGY 2 cut(s) 48, 101
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 2 cut(s) 37, 165
BstC8I GCNNGC 1 cut(s) 103
BstEII GGTNACC 1 cut(s) 78
BstF5I GGATG 1 cut(s) 67
BstPI GGTNACC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 70
BstSNI TACGTA 1 cut(s) 37
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 103
Cfr10I RCCGGY 2 cut(s) 48, 101
CviJI RGCY 3 cut(s) 48, 101, 161
CviKI_1 RGCY 3 cut(s) 48, 101, 161
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco105I TACGTA 1 cut(s) 37
Eco72I CACGTG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 78
EcoO65I GGTNACC 1 cut(s) 78
FaqI GGGAC 1 cut(s) 182
FokI GGATG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 48
HapII CCGG 3 cut(s) 49, 71, 102
HpaII CCGG 3 cut(s) 49, 71, 102
HphI GGTGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 52
HpyCH4IV ACGT 2 cut(s) 36, 164
HpyCH4V TGCA 1 cut(s) 130
HpySE526I ACGT 2 cut(s) 36, 164
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
LpnPI CCDG 3 cut(s) 62, 84, 115
LweI GCATC 1 cut(s) 117
MaeII ACGT 2 cut(s) 36, 164
MaeIII GTNAC 4 cut(s) 23, 78, 107, 184
MboII GAAGA 1 cut(s) 134
MluCI AATT 2 cut(s) 211, 217
MnlI CCTC 1 cut(s) 175
MroNI GCCGGC 1 cut(s) 101
MspI CCGG 3 cut(s) 49, 71, 102
MspR9I CCNGG 1 cut(s) 72
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 72
NgoMIV GCCGGC 1 cut(s) 101
NmuCI GTSAC 3 cut(s) 23, 78, 107
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 194
PdiI GCCGGC 1 cut(s) 103
PmaCI CACGTG 1 cut(s) 165
PmlI CACGTG 1 cut(s) 165
Ppu21I YACGTR 2 cut(s) 37, 165
PspCI CACGTG 1 cut(s) 165
PspEI GGTNACC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 72
SetI ASST 4 cut(s) 39, 137, 167, 186
SfaNI GCATC 1 cut(s) 117
SnaBI TACGTA 1 cut(s) 37
Sse9I AATT 2 cut(s) 211, 217
SspI AATATT 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 70
TaiI ACGT 2 cut(s) 39, 167
TaqI TCGA 3 cut(s) 56, 120, 180
TasI AATT 2 cut(s) 211, 217
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 3 cut(s) 23, 78, 107
Tsp45I GTSAC 3 cut(s) 23, 78, 107
TspRI CASTG 1 cut(s) 112
XapI RAATTY 2 cut(s) 211, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.