RchiOBHm_Chr6g0271331

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
30835369 .. 30837632
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24340

Sequence Viewer

Length: 309 bp
ATGTGTTATGGAGATTTGGGAGGAAATGAGGTCTACAAAATTGTAAGCTTTTGTAGAAGGAGTTGGTGGGTCAGTTTCTATTTGAATCGGATAAGGGAATCTGAAGGATTAATGGTGGTAGAATGCAACTTCGATGATTCGGCTACTAATTTGGAAAAGAAGAATGAACTCGAGCATGTGCACATGGAATTGGACGAAGTATCCAAAGTCGGAAACGAAGCTAAGTTTGGGCGAGCACTCCAATTCCAGTGTGCAGGTTTCGAGTATGTGGTCGGGGAGCATACAGAGGAGGCACATGGCTCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.67

Weight (kDa)

4.89

Isoelectric Point (pI)

26.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 123
AgsI TTSAA 1 cut(s) 85
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AluBI AGCT 2 cut(s) 48, 221
AluI AGCT 2 cut(s) 48, 221
Alw21I GWGCWC 2 cut(s) 183, 238
Alw44I GTGCAC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 170
ApaLI GTGCAC 1 cut(s) 179
AseI ATTAAT 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 183, 238
BcgI CGANNNNNNTGC 1 cut(s) 282
BciVI GTATCC 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 245
BfuI GTATCC 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 183, 238
BsiHKCI CYCGRG 1 cut(s) 170
BsmI GAATGC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 183, 238
BspMI ACCTGC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 179
BstSLI GKGCMC 1 cut(s) 183
BsuI GTATCC 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 254
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 234
CviAII CATG 3 cut(s) 176, 184, 296
CviJI RGCY 5 cut(s) 48, 143, 221, 300, 305
CviKI_1 RGCY 5 cut(s) 48, 143, 221, 300, 305
DdeI CTNAG 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 170
FaeI CATG 3 cut(s) 179, 187, 299
FaiI YATR 6 cut(s) 9, 177, 185, 267, 282, 297
FatI CATG 3 cut(s) 175, 183, 295
FblI GTMKAC 1 cut(s) 33
Hin1II CATG 3 cut(s) 179, 187, 299
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 3 cut(s) 85, 98, 137
Hpy166II GTNNAC 2 cut(s) 34, 181
Hpy188I TCNGA 3 cut(s) 90, 103, 212
Hpy8I GTNNAC 2 cut(s) 34, 181
HpyAV CCTTC 2 cut(s) 51, 98
HpyCH4V TGCA 3 cut(s) 126, 181, 254
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 3 cut(s) 179, 187, 299
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 2 cut(s) 240, 260
MboII GAAGA 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 183, 238
MluCI AATT 4 cut(s) 39, 148, 188, 242
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 4 cut(s) 14, 22, 280, 283
MseI TTAA 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 128
NlaIII CATG 3 cut(s) 179, 187, 299
NmeAIII GCCGAG 1 cut(s) 281
NspI RCATGY 1 cut(s) 179
PaeR7I CTCGAG 1 cut(s) 170
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 3 cut(s) 85, 98, 137
PshBI ATTAAT 1 cut(s) 110
PspXI VCTCGAGB 1 cut(s) 170
SaqAI TTAA 1 cut(s) 110
SduI GDGCHC 2 cut(s) 183, 238
SetI ASST 4 cut(s) 33, 50, 223, 259
Sfr274I CTCGAG 1 cut(s) 170
SgeI CNNG 9 cut(s) 182, 184, 188, 196, 245, 259, 267, 274, 286
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 4 cut(s) 39, 148, 188, 242
TaqI TCGA 3 cut(s) 132, 171, 261
TasI AATT 4 cut(s) 39, 148, 188, 242
TfiI GAWTC 3 cut(s) 85, 98, 137
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 1 cut(s) 254
VneI GTGCAC 1 cut(s) 179
VspI ATTAAT 1 cut(s) 110
XceI RCATGY 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.