Rroxscaffold_3G00218140

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
174182 .. 177830
3649 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00218140.1

Sequence Viewer

Length: 165 bp
ATGGAAATGCCGAAGCAATTAAAGGAAGAGATTGGAGAGATTTATATGGAATGGATGAAGGGACTCGAGCATGTACACTTGGGCTTGGATAAAGGATCGAAAGTTGGGAACGAACCCAAATGTGGACGAGCACTCCAATTCCGGCTTCTCGGGGTTGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.22

Weight (kDa)

6.06

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 103
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 1 cut(s) 103
Ama87I CYCGRG 2 cut(s) 65, 149
AvaI CYCGRG 2 cut(s) 65, 149
Bbv12I GWGCWC 1 cut(s) 133
BmeT110I CYCGRG 2 cut(s) 65, 149
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 133
BsiHKCI CYCGRG 2 cut(s) 65, 149
BsiSI CCGG 1 cut(s) 142
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 75
BsoBI CYCGRG 2 cut(s) 65, 149
Bsp1286I GDGCHC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 73
Bsp143I GATC 1 cut(s) 95
BspPI GGATC 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 73
BssMI GATC 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 21
BstAUI TGTACA 1 cut(s) 73
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 1 cut(s) 98
BstMBI GATC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 74
BtsCI GGATG 1 cut(s) 60
Csp6I GTAC 1 cut(s) 74
CviAII CATG 1 cut(s) 71
CviJI RGCY 2 cut(s) 84, 145
CviKI_1 RGCY 2 cut(s) 84, 145
CviQI GTAC 1 cut(s) 74
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco88I CYCGRG 2 cut(s) 65, 149
FaeI CATG 1 cut(s) 74
FaiI YATR 3 cut(s) 45, 47, 72
FaqI GGGAC 1 cut(s) 75
FatI CATG 1 cut(s) 70
FokI GGATG 1 cut(s) 67
HapII CCGG 1 cut(s) 142
Hin1II CATG 1 cut(s) 74
HinfI GANTC 1 cut(s) 63
HpaII CCGG 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 76, 125
Hpy8I GTNNAC 2 cut(s) 76, 125
HpyAV CCTTC 1 cut(s) 52
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 95
LpnPI CCDG 1 cut(s) 155
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 2 cut(s) 17, 137
MlyI GAGTC 1 cut(s) 57
MseI TTAA 1 cut(s) 20
MspI CCGG 1 cut(s) 142
NdeII GATC 1 cut(s) 95
NlaIII CATG 1 cut(s) 74
NspI RCATGY 1 cut(s) 74
PaeR7I CTCGAG 1 cut(s) 65
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PspXI VCTCGAGB 1 cut(s) 65
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 20
Sau3AI GATC 1 cut(s) 95
SchI GAGTC 1 cut(s) 57
SduI GDGCHC 1 cut(s) 133
Sfr274I CTCGAG 1 cut(s) 65
SgeI CNNG 8 cut(s) 77, 79, 83, 91, 97, 140, 154, 161
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 2 cut(s) 17, 137
TaqI TCGA 2 cut(s) 66, 98
TasI AATT 2 cut(s) 17, 137
TatI WGTACW 1 cut(s) 73
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 71
XceI RCATGY 1 cut(s) 74
XhoI CTCGAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.