RchiOBHm_Chr4g0399861

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
17093537 .. 17093779
243 bp
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UTR
Exon/CDS
Intron
PRQ37196

Sequence Viewer

Length: 243 bp
ATGGTTCAGGAAACACGATCGTTAAGGAAGCTTAAGCGGAAAGCATCAGAGTGTGGAGTACGCCAACATTTTCCAGGTAGGGTGAGCTGTCCCTTCCTTATTAGAGGTTTTTCAGTATATGTAGAATGCTCTAGTATAATATTATGTTGCCTGCAACTATATTTTTGGTTGTTCATTAGTCGATGCCTCGTGATACATGTGTTTTCAGAACTGATGATTGTTGATTGCGAAAACCGAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.35

Weight (kDa)

9.01

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AfaI GTAC 1 cut(s) 60
AflII CTTAAG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 196
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 2 cut(s) 31, 87
AluI AGCT 2 cut(s) 31, 87
AsuHPI GGTGA 1 cut(s) 94
BaeI ACNNNNGTAYC 2 cut(s) 185, 218
BauI CACGAG 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 75
BfaI CTAG 2 cut(s) 132, 241
BfrI CTTAAG 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 53, 173
BsaJI CCNNGG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 1 cut(s) 37
BspTI CTTAAG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 1 cut(s) 17
BssSI CACGAG 1 cut(s) 188
Bst2BI CACGAG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 152
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstMCI CGRYCG 1 cut(s) 20
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 59
CviAII CATG 1 cut(s) 197
CviJI RGCY 3 cut(s) 31, 87, 240
CviKI_1 RGCY 3 cut(s) 31, 87, 240
CviQI GTAC 1 cut(s) 59
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 73
FaeI CATG 1 cut(s) 200
FaiI YATR 6 cut(s) 118, 120, 137, 145, 160, 198
FaqI GGGAC 1 cut(s) 75
FatI CATG 1 cut(s) 196
FspBI CTAG 2 cut(s) 132, 241
Hin1II CATG 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 29
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 49, 208
Hpy188III TCNNGA 2 cut(s) 8, 190
HpyAV CCTTC 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 154
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 17
LpnPI CCDG 3 cut(s) 60, 87, 164
LweI GCATC 2 cut(s) 53, 173
MaeI CTAG 2 cut(s) 132, 241
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MnlI CCTC 3 cut(s) 98, 197, 230
MseI TTAA 2 cut(s) 23, 33
MslI CAYNNNNRTG 1 cut(s) 49
MspCI CTTAAG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 131
MvaI CCWGG 1 cut(s) 75
NdeII GATC 1 cut(s) 17
NlaIII CATG 1 cut(s) 200
NspI RCATGY 1 cut(s) 200
PciI ACATGT 1 cut(s) 196
PctI GAATGC 1 cut(s) 131
Ple19I CGATCG 1 cut(s) 20
PscI ACATGT 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PvuI CGATCG 1 cut(s) 20
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 49
SaqAI TTAA 2 cut(s) 23, 33
Sau3AI GATC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 75
SetI ASST 4 cut(s) 33, 79, 89, 109
SfaNI GCATC 2 cut(s) 53, 173
SgeI CNNG 9 cut(s) 20, 27, 86, 87, 144, 163, 200, 202, 209
SmiMI CAYNNNNRTG 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SsiI CCGC 1 cut(s) 37
SspI AATATT 1 cut(s) 141
SspMI CTAG 2 cut(s) 132, 241
StyD4I CCNGG 1 cut(s) 73
TaqI TCGA 1 cut(s) 181
Tru1I TTAA 2 cut(s) 23, 33
Tru9I TTAA 2 cut(s) 23, 33
TspDTI ATGAA 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 32
XceI RCATGY 1 cut(s) 200
XspI CTAG 2 cut(s) 132, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.