Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004253

Physical Location & Seq

Genomic Coordinates Forward (+)

55660192 .. 55661753

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019701

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCGCCTTATTCTTGGTTGAAGCCTCTAATTCGATTTAGATTGAAAACCCTAATTTGTGATGTTGATTTGGATTGTGAGGGACTGGAAATCTATGTTCGGGAGATTTTGGAGGAAATGAGGTATGTGAAGTTCAGGAATTTGGAGTTTTGGAAGGGAAGAGCTGCTGGGTCAGTTAAGTTGAAATCAAGGAAAGGGATTCGTATGGTTAATGGTTGTGGAATGCAGCCAGGACGGAATTGGTTTTCGAGTTGGAGAAGAAGAGATGGACTCAAGCATGTGCACATGGAATTGGATGAAGTATTGAGAAAAATCAGAAGCGAAGCTAAGTTTGGTCGAACACTCCATATCCAGGGATCCTACGGTGTCGATAACCGTAAACCTCTGGAGGGGGCCGTGCTCCTATGTTTGTCGAGGAAGAGTGAGTACAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

17.13

Weight (kDa)

9.97

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004253)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341661 RchiOBHm_Chr3g0485461 RchiOBHm_Chr3g0496711 RchiOBHm_Chr3g0497561 RchiOBHm_Chr4g0399861 RchiOBHm_Chr5g0049551 RchiOBHm_Chr5g0056221 RchiOBHm_Chr5g0079661 RchiOBHm_Chr6g0245421 RchiOBHm_Chr6g0251521 RchiOBHm_Chr6g0271331 RchiOBHm_Chr6g0273341 RchiOBHm_Chr7g0183411 RchiOBHm_Chr7g0207781 RchiOBHm_Chr7g0234061
rosa_laevigata	RLG00000019701
rosa_multiflora	Rmu_sc0002986.1_g000038
rosa_roxburghii	Rroxscaffold_176G00431310 Rroxscaffold_1G00025630 Rroxscaffold_1G00032450 Rroxscaffold_3G00218140 Rroxscaffold_4G00319190 Rroxscaffold_5G00364950 Rroxscaffold_5G00372490 Rroxscaffold_6G00405160 Rroxscaffold_7G00163910
rosa_rugosa	Rorug05G0249500 Rorug05G0555600 Rorug06G0344700
rosa_samantha	Rh2BG593000 Rh4DG246600
rosa_wichuraiana	Rw0G005310 Rw1G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	351, 364
AcsI	RAATTY	1 cut(s)	139
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	352, 389
AgsI	TTSAA	3 cut(s)	22, 46, 184
AjnI	CCWGG	2 cut(s)	229, 351
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	2 cut(s)	164, 326
AluI	AGCT	2 cut(s)	164, 326
Alw21I	GWGCWC	2 cut(s)	285, 402
Alw44I	GTGCAC	1 cut(s)	281
AlwI	GGATC	2 cut(s)	351, 364
AoxI	GGCC	1 cut(s)	393
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	164, 226
ApoI	RAATTY	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	356
BarI	GAAGNNNNNNTAC	1 cut(s)	410
Bbv12I	GWGCWC	2 cut(s)	285, 402
BbvI	GCAGC	2 cut(s)	151, 238
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	2 cut(s)	231, 353
BisI	GCNGC	2 cut(s)	165, 227
BlsI	GCNGC	2 cut(s)	166, 228
Bme1390I	CCNGG	2 cut(s)	231, 353
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	358, 394
BmrFI	CCNGG	2 cut(s)	231, 353
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
BpmI	CTGGAG	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 389
Bse1I	ACTGG	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	231, 353
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	352, 389
BseNI	ACTGG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	151, 238
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	2 cut(s)	285, 402
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	352, 389
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	285, 402
Bsp143I	GATC	1 cut(s)	356
BspANI	GGCC	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	358, 394
BspPI	GGATC	2 cut(s)	351, 364
BspQI	GCTCTTC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	231, 353
Bst4CI	ACNGT	3 cut(s)	365, 377, 435
Bst6I	CTCTTC	3 cut(s)	154, 256, 413
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	356
BstNI	CCWGG	2 cut(s)	231, 353
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	229, 351
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	151, 238
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	2 cut(s)	278, 286
CviJI	RGCY	5 cut(s)	25, 164, 229, 326, 395
CviKI_1	RGCY	5 cut(s)	25, 164, 229, 326, 395
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
Eam1104I	CTCTTC	3 cut(s)	154, 256, 413
EarI	CTCTTC	3 cut(s)	154, 256, 413
EcoRII	CCWGG	2 cut(s)	229, 351
FaeI	CATG	2 cut(s)	281, 289
FaiI	YATR	7 cut(s)	96, 126, 206, 279, 287, 348, 406
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	2 cut(s)	277, 285
Fnu4HI	GCNGC	2 cut(s)	165, 227
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	165, 227
GluI	GCNGC	2 cut(s)	165, 227
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	281, 289
HinfI	GANTC	2 cut(s)	199, 270
Hpy166II	GTNNAC	2 cut(s)	283, 380
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	3 cut(s)	101, 136, 386
Hpy8I	GTNNAC	2 cut(s)	283, 380
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	3 cut(s)	365, 377, 435
HpyCH4V	TGCA	2 cut(s)	226, 283
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	281, 289
Kzo9I	GATC	1 cut(s)	356
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	405
LpnPI	CCDG	8 cut(s)	71, 121, 153, 216, 243, 338, 365, 371
Lsp1109I	GCAGC	2 cut(s)	151, 238
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	4 cut(s)	171, 270, 273, 430
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	2 cut(s)	285, 402
MluCI	AATT	5 cut(s)	30, 54, 139, 238, 290
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	7 cut(s)	36, 73, 106, 114, 382, 393, 408
MseI	TTAA	2 cut(s)	177, 210
MspR9I	CCNGG	2 cut(s)	231, 353
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	2 cut(s)	231, 353
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	2 cut(s)	281, 289
NlaIV	GGNNCC	2 cut(s)	358, 394
NspI	RCATGY	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	166, 228
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	229, 351
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	229, 351
PspN4I	GGNNCC	2 cut(s)	358, 394
PspPI	GGNCC	1 cut(s)	393
PsrI	GAACNNNNNNTAC	2 cut(s)	116, 148
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	177, 210
SatI	GCNGC	2 cut(s)	165, 227
Sau3AI	GATC	1 cut(s)	356
Sau96I	GGNCC	1 cut(s)	393
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	231, 353
SduI	GDGCHC	2 cut(s)	285, 402
SetI	ASST	4 cut(s)	125, 166, 328, 385
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	5 cut(s)	30, 54, 139, 238, 290
StyD4I	CCNGG	2 cut(s)	229, 351
TaaI	ACNGT	3 cut(s)	365, 377, 435
TaqI	TCGA	5 cut(s)	34, 248, 337, 369, 413
TasI	AATT	5 cut(s)	30, 54, 139, 238, 290
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	177, 210
Tru9I	TTAA	2 cut(s)	177, 210
TseI	GCWGC	2 cut(s)	164, 226
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.