Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00205

Orthogroup ID

OG0004253

Physical Location & Seq

Genomic Coordinates Reverse (-)

55423 .. 55892

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCCGAGTTTGTGCTTCTCCGTTCTCCAACCTCCAGTCCAAATTGAGTCAAACCATCACCATAATGGAGTCAGCGCCTCTCCCTTGACCAAAACCCCATGGCCCCGACCTTCGGCATCGATCACAGTGGCCACATGCGCTGCACCACAGCTTTGCCACTCATGGATGCTAGATTTCCAGACAGTTTCGAATAGGTTTGAGGAGTTTTGCATTTTGGAGGACTTTAGGTCTGTGAAGTTCGGAAATTTGGAGTTTTGGAAGAGAGGAGCTACTGGGTCAGTTAAGTTGATGTTAAGGAATGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.43

Weight (kDa)

8.48

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004253)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341661 RchiOBHm_Chr3g0485461 RchiOBHm_Chr3g0496711 RchiOBHm_Chr3g0497561 RchiOBHm_Chr4g0399861 RchiOBHm_Chr5g0049551 RchiOBHm_Chr5g0056221 RchiOBHm_Chr5g0079661 RchiOBHm_Chr6g0245421 RchiOBHm_Chr6g0251521 RchiOBHm_Chr6g0271331 RchiOBHm_Chr6g0273341 RchiOBHm_Chr7g0183411 RchiOBHm_Chr7g0207781 RchiOBHm_Chr7g0234061
rosa_laevigata	RLG00000019701
rosa_multiflora	Rmu_sc0002986.1_g000038
rosa_roxburghii	Rroxscaffold_176G00431310 Rroxscaffold_1G00025630 Rroxscaffold_1G00032450 Rroxscaffold_3G00218140 Rroxscaffold_4G00319190 Rroxscaffold_5G00364950 Rroxscaffold_5G00372490 Rroxscaffold_6G00405160 Rroxscaffold_7G00163910
rosa_rugosa	Rorug05G0249500 Rorug05G0555600 Rorug06G0344700
rosa_samantha	Rh2BG593000 Rh4DG246600
rosa_wichuraiana	Rw0G005310 Rw1G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	244, 303
AfiI	CCNNNNNNNGG	1 cut(s)	112
AhdI	GACNNNNNGTC	1 cut(s)	226
AluBI	AGCT	2 cut(s)	151, 269
AluI	AGCT	2 cut(s)	151, 269
AoxI	GGCC	2 cut(s)	101, 129
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	244, 303
AspLEI	GCGC	2 cut(s)	77, 140
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	50
AsuII	TTCGAA	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	125, 156
BmuI	ACTGGG	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	35, 277
BseCI	ATCGAT	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseNI	ACTGG	2 cut(s)	35, 277
BseRI	GAGGAG	2 cut(s)	215, 279
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	103, 131
BshVI	ATCGAT	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	112
BsnI	GGCC	2 cut(s)	103, 131
Bsp119I	TTCGAA	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	120
Bsp19I	CCATGG	1 cut(s)	98
BspANI	GGCC	2 cut(s)	103, 131
BspDI	ATCGAT	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	35, 277
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	127, 184
Bst6I	CTCTTC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 140
BstKTI	GATC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	103, 131
BsuTUI	ATCGAT	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	132
CfoI	GCGC	2 cut(s)	77, 140
Cfr13I	GGNCC	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	119
CviAII	CATG	3 cut(s)	99, 135, 162
CviJI	RGCY	4 cut(s)	103, 131, 151, 269
CviKI_1	RGCY	4 cut(s)	103, 131, 151, 269
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	254
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	3 cut(s)	102, 138, 165
FaiI	YATR	4 cut(s)	63, 100, 136, 163
FatI	CATG	3 cut(s)	98, 134, 161
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	2 cut(s)	76, 139
GluI	GCNGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	103, 131
HhaI	GCGC	2 cut(s)	77, 140
Hin1II	CATG	3 cut(s)	102, 138, 165
Hin6I	GCGC	2 cut(s)	75, 138
HinP1I	GCGC	2 cut(s)	75, 138
HinfI	GANTC	2 cut(s)	47, 69
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	2 cut(s)	127, 184
HpyCH4V	TGCA	2 cut(s)	143, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	102, 138, 165
HspAI	GCGC	2 cut(s)	75, 138
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	3 cut(s)	48, 191, 258
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	125, 156
MaeI	CTAG	1 cut(s)	170
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	1 cut(s)	271
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	3 cut(s)	42, 244, 303
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	56, 78
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	5 cut(s)	42, 88, 193, 211, 257
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	2 cut(s)	282, 293
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	120
NlaIII	CATG	3 cut(s)	102, 138, 165
NlaIV	GGNNCC	1 cut(s)	104
NmeAIII	GCCGAG	1 cut(s)	30
NspI	RCATGY	1 cut(s)	138
NspV	TTCGAA	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	55, 77
PpsI	GAGTC	2 cut(s)	55, 77
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	282, 293
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	2 cut(s)	56, 78
SetI	ASST	6 cut(s)	34, 112, 153, 197, 230, 271
SfaNI	GCATC	2 cut(s)	125, 156
SfuI	TTCGAA	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	63
Sse9I	AATT	3 cut(s)	42, 244, 303
SspMI	CTAG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	127, 184
TaqI	TCGA	2 cut(s)	119, 188
TasI	AATT	3 cut(s)	42, 244, 303
Tru1I	TTAA	2 cut(s)	282, 293
Tru9I	TTAA	2 cut(s)	282, 293
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	1 cut(s)	132
XapI	RAATTY	2 cut(s)	244, 303
XceI	RCATGY	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.