Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004253

Physical Location & Seq

Genomic Coordinates Forward (+)

33638285 .. 33640017

Gene Structure 1733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGACCCGAGCGTGTGCACTTGGATTTGGATAAAGGATCGAAAGTCGGGAATGAACCCGAAATGTGGACGAGCACTCCAATTCCAGTGTGCAGGTTTCGAGGATGTGGTCGGGGAGCCTATAGAGGAGGCACATGCCTGGCTTGGCGTATTCTTCTTTGACTTTATCAAGAAGTGGTTTCGGTCTTTTGTCGGATCTCGAAGTAACTTGCTTATTTACTTTCTTACTAATTTATTTATTTATTTCTTACTCGCTTACAAAAATTCTGGGAGACCCGTAACCCTGGGGCGCGTCTCCCATGTTTGTAGTTATTTAGTGATTTGTTTTATTTTCCAAATTGGGCTCCGAGCGCAAGCCCAAAACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

14.09

Weight (kDa)

9.12

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004253)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341661 RchiOBHm_Chr3g0485461 RchiOBHm_Chr3g0496711 RchiOBHm_Chr3g0497561 RchiOBHm_Chr4g0399861 RchiOBHm_Chr5g0049551 RchiOBHm_Chr5g0056221 RchiOBHm_Chr5g0079661 RchiOBHm_Chr6g0245421 RchiOBHm_Chr6g0251521 RchiOBHm_Chr6g0271331 RchiOBHm_Chr6g0273341 RchiOBHm_Chr7g0183411 RchiOBHm_Chr7g0207781 RchiOBHm_Chr7g0234061
rosa_laevigata	RLG00000019701
rosa_multiflora	Rmu_sc0002986.1_g000038
rosa_roxburghii	Rroxscaffold_176G00431310 Rroxscaffold_1G00025630 Rroxscaffold_1G00032450 Rroxscaffold_3G00218140 Rroxscaffold_4G00319190 Rroxscaffold_5G00364950 Rroxscaffold_5G00372490 Rroxscaffold_6G00405160 Rroxscaffold_7G00163910
rosa_rugosa	Rorug05G0249500 Rorug05G0555600 Rorug06G0344700
rosa_samantha	Rh2BG593000 Rh4DG246600
rosa_wichuraiana	Rw0G005310 Rw1G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AccII	CGCG	1 cut(s)	291
AclWI	GGATC	2 cut(s)	45, 202
AcsI	RAATTY	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	65
AjnI	CCWGG	2 cut(s)	137, 282
Alw21I	GWGCWC	2 cut(s)	20, 76
Alw26I	GTCTC	2 cut(s)	265, 298
Alw44I	GTGCAC	1 cut(s)	16
AlwI	GGATC	2 cut(s)	45, 202
Ama87I	CYCGRG	1 cut(s)	7
ApaLI	GTGCAC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	2 cut(s)	291, 352
AspS9I	GGNCC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	20, 76
BciT130I	CCWGG	2 cut(s)	139, 284
BcoDI	GTCTC	2 cut(s)	265, 298
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	83
Bme1390I	CCNGG	2 cut(s)	139, 284
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 117, 344
BmrFI	CCNGG	2 cut(s)	139, 284
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	282, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	139, 284
BseDI	CCNNGG	2 cut(s)	282, 283
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	291
BsiHKAI	GWGCWC	2 cut(s)	20, 76
BsiHKCI	CYCGRG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	265, 298
BsmBI	CGTCTC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	7
Bsp1286I	GDGCHC	3 cut(s)	20, 76, 345
Bsp143I	GATC	2 cut(s)	37, 194
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	6, 117, 344
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	45, 202
BspTNI	GGTCTC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	282, 283
BssMI	GATC	2 cut(s)	37, 194
Bst2UI	CCWGG	2 cut(s)	139, 284
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	291, 352
BstKTI	GATC	2 cut(s)	40, 197
BstMAI	GTCTC	2 cut(s)	265, 298
BstMBI	GATC	2 cut(s)	37, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	2 cut(s)	139, 284
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	137, 282
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	20
BstUI	CGCG	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	354
CfoI	GCGC	2 cut(s)	291, 352
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	280
CviAII	CATG	2 cut(s)	134, 299
CviJI	RGCY	4 cut(s)	118, 142, 343, 356
CviKI_1	RGCY	4 cut(s)	118, 142, 343, 356
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	39, 196
DpnII	GATC	2 cut(s)	37, 194
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	137, 282
EcoT38I	GRGCYC	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	2 cut(s)	137, 302
FaiI	YATR	3 cut(s)	122, 135, 300
FatI	CATG	2 cut(s)	133, 298
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	345
GlaI	GCGC	2 cut(s)	290, 351
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	2 cut(s)	291, 352
Hin1II	CATG	2 cut(s)	137, 302
Hin6I	GCGC	2 cut(s)	289, 350
HinP1I	GCGC	2 cut(s)	289, 350
Hpy166II	GTNNAC	2 cut(s)	18, 68
Hpy188I	TCNGA	2 cut(s)	194, 347
Hpy188III	TCNNGA	3 cut(s)	48, 169, 198
Hpy8I	GTNNAC	2 cut(s)	18, 68
HpyCH4V	TGCA	2 cut(s)	18, 92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	137, 302
HspAI	GCGC	2 cut(s)	289, 350
Kzo9I	GATC	2 cut(s)	37, 194
LmnI	GCTCC	2 cut(s)	115, 348
LpnPI	CCDG	7 cut(s)	78, 98, 124, 151, 252, 269, 296
MaeIII	GTNAC	2 cut(s)	203, 277
MalI	GATC	2 cut(s)	39, 196
MboI	GATC	2 cut(s)	37, 194
MboII	GAAGA	1 cut(s)	145
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	3 cut(s)	20, 76, 345
MluCI	AATT	4 cut(s)	80, 229, 262, 336
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	3 cut(s)	94, 118, 121
MspR9I	CCNGG	2 cut(s)	139, 284
MvaI	CCWGG	2 cut(s)	139, 284
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	349
NdeII	GATC	2 cut(s)	37, 194
NlaIII	CATG	2 cut(s)	137, 302
NlaIV	GGNNCC	3 cut(s)	6, 117, 344
NspI	RCATGY	1 cut(s)	137
PasI	CCCWGGG	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	137, 282
PspGI	CCWGG	2 cut(s)	137, 282
PspN4I	GGNNCC	3 cut(s)	6, 117, 344
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	194
Sau3AI	GATC	2 cut(s)	37, 194
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	139, 284
SduI	GDGCHC	3 cut(s)	20, 76, 345
SetI	ASST	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	4 cut(s)	80, 229, 262, 336
StyD4I	CCNGG	2 cut(s)	137, 282
TaqI	TCGA	3 cut(s)	40, 99, 199
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	4 cut(s)	80, 229, 262, 336
TscAI	CASTG	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	92
VneI	GTGCAC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.