Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004253

Physical Location & Seq

Genomic Coordinates Reverse (-)

45886196 .. 45888744

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG246600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGAAATGCCGAAGCAATTAAAGGAAGAGATTGGAGAGATTTATATGGAATGGATGAAGAGACATGTGGACACCAAGGCCACGACGCTTGCCGGAGCACTCAAGCATGTGAGACGTCGTAGGAGATCGATGCCGCCATTTTTAGCTCCAATTCGTGAATTCTTTGAGAGGGATTTAGGGAAGGCTCATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

64

Amino Acids

7.68

Weight (kDa)

10.1

Isoelectric Point (pI)

100.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004253)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341661 RchiOBHm_Chr3g0485461 RchiOBHm_Chr3g0496711 RchiOBHm_Chr3g0497561 RchiOBHm_Chr4g0399861 RchiOBHm_Chr5g0049551 RchiOBHm_Chr5g0056221 RchiOBHm_Chr5g0079661 RchiOBHm_Chr6g0245421 RchiOBHm_Chr6g0251521 RchiOBHm_Chr6g0271331 RchiOBHm_Chr6g0273341 RchiOBHm_Chr7g0183411 RchiOBHm_Chr7g0207781 RchiOBHm_Chr7g0234061
rosa_laevigata	RLG00000019701
rosa_multiflora	Rmu_sc0002986.1_g000038
rosa_roxburghii	Rroxscaffold_176G00431310 Rroxscaffold_1G00025630 Rroxscaffold_1G00032450 Rroxscaffold_3G00218140 Rroxscaffold_4G00319190 Rroxscaffold_5G00364950 Rroxscaffold_5G00372490 Rroxscaffold_6G00405160 Rroxscaffold_7G00163910
rosa_rugosa	Rorug05G0249500 Rorug05G0555600 Rorug06G0344700
rosa_samantha	Rh2BG593000 Rh4DG246600
rosa_wichuraiana	Rw0G005310 Rw1G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	118
AciI	CCGC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	64
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	2 cut(s)	55, 106
AoxI	GGCC	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	55, 106
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
BmsI	GCATC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	86
Bsa29I	ATCGAT	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	75
BseCI	ATCGAT	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	55, 106
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	125
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	80
BspDI	ATCGAT	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	125
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	75
Bst6I	CTCTTC	2 cut(s)	21, 53
BstACI	GRCGYC	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	128
BstMAI	GTCTC	2 cut(s)	55, 106
BstMBI	GATC	1 cut(s)	125
BstNSI	RCATGY	2 cut(s)	68, 110
Bsu15I	ATCGAT	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	80
BsuTUI	ATCGAT	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	128
CseI	GACGC	1 cut(s)	94
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	2 cut(s)	65, 107
CviJI	RGCY	3 cut(s)	80, 146, 185
CviKI_1	RGCY	3 cut(s)	80, 146, 185
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	21, 53
EarI	CTCTTC	2 cut(s)	21, 53
Eco130I	CCWWGG	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	2 cut(s)	68, 110
FaiI	YATR	7 cut(s)	45, 47, 66, 108, 189, 191, 193
FatI	CATG	2 cut(s)	64, 106
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	68, 110
HpaII	CCGG	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	2 cut(s)	88, 120
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	115
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	68, 110
Kzo9I	GATC	1 cut(s)	125
LmnI	GCTCC	2 cut(s)	95, 151
LpnPI	CCDG	1 cut(s)	106
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	115
MalI	GATC	1 cut(s)	127
MboI	GATC	1 cut(s)	125
MboII	GAAGA	2 cut(s)	38, 70
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	3 cut(s)	17, 150, 158
MnlI	CCTC	1 cut(s)	162
MseI	TTAA	1 cut(s)	20
MspI	CCGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	68, 110
NspI	RCATGY	2 cut(s)	68, 110
PciI	ACATGT	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	135
PscI	ACATGT	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	2 cut(s)	118, 148
SfaNI	GCATC	1 cut(s)	120
SgeI	CNNG	8 cut(s)	77, 88, 94, 101, 105, 115, 119, 167
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	17, 150, 158
SsiI	CCGC	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	17, 150, 158
TauI	GCSGC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	71
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	2 cut(s)	68, 110
ZraI	GACGTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.